1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCAGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgttttgattagttcccacattttcatatttagtgcactaatttattcttggttgtctgtcctatacttgttgactatcctacttcttgtgttg...
species | Glycine max |
transcript | GLYMA08G20300.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGTTTTGGATGAG-CTGATGAAATGCTTTCACGTGGTTTCAAGGATCAG ATCTATGACATCTTCCAGCTGCTGCCATCCAAAATEST: gi|17964769|gb|BM271498.1|BM271498
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgtt ... ggtgttgcagATCTATGACATCTTCCAGCTGCTGCCATCCAAAAT
EST: GTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAG ATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCEST: gi|7925063|gb|AW831089.1|AW831089
genomic: GTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgtt ... ggtgttgcagATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTC
EST: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAG ATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCEST: gi|18041380|gb|BM309674.1|BM309674
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgtt ... ggtgttgcagATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTC
EST: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAG ATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCEST: gi|7285462|gb|AW597949.1|AW597949
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgtt ... ggtgttgcagATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTC
EST: GGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAG ATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCEST: gi|4396635|gb|AI495632.1|AI495632
genomic: GGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgtt ... ggtgttgcagATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTC
EST: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAG ATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCEST: gi|13312426|gb|BG406077.1|BG406077
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgtt ... ggtgttgcagATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTC
EST: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAG ATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCEST: gi|7686509|gb|AW757157.1|AW757157
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgtt ... ggtgttgcagATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTC
EST: GATGAAATGCTTTCACGTGGTTTCAAGGATCAG ATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCEST: gi|37994639|gb|CF806304.1|CF806304
genomic: GATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgtt ... ggtgttgcagATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTC
EST: TTGTTTTGGATGAGGCTGATGAAATGCTNTCACGTGGTTTCAAGGATCAG ATCTATGACATCTTCCAGCTGCEST: gi|6502132|gb|AW203505.1|AW203505
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgtt ... ggtgttgcagATCTATGACATCTTCCAGCTGC
EST: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAG ATCTATGACATCTTCCAGCTGCTGCCATTCAAAATTCAGGTTGGAGTGTTC
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgtt ... ggtgttgcagATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCAGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgttttgattagttcccacattttcatatttagtgcactaatttattcttggttgtctgtcctatacttgttgactatcctacttcttgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT