Sequence
atgc intronic sequence ATGC exonic sequenceGTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCAGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgttttgattagttcccacattttcatatttagtgcactaatttattcttggttgtctgtcctatacttgttgactatcctacttcttgtgttg...
Basic information
species | Glycine max |
transcript | GLYMA08G20300.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G20300.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G54270.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCAGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgttttgattagttcccacattt-tcatatttagtg--cactaatttattcttggttgtctgtcctatacttgttgactatcctacttcttgtgttg
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TTTTGACATGCTTAGAAGACAATCTCTCCGCCCTGACTGCATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGATCAGgtttgttatcttcttcaaagtttgaatctaccctctgtggttatctctgatattgacttggttttgtgttgttttctggtgaatttgcag-------------
upper sequence: GLYMA08G20300.2 (Glycine max), 5'ss of exon 4
lower sequence: AT3G13920.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCAGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgttttgattagttcccacattttcatatttagtgcactaatttattcttggttgtctgtcctatacttgttgactatcctacttcttgtgttg
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CTTTGACATGTTGAAGAGGCAGTCTCTTCGTGCTGACAACATCAAGATGTTTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAGgtatgc------aaatatttctcagtgtttca-attccattc-tcgttatagtttaacttgaatctcactggtttctgggttttttcag-----------
upper sequence: GLYMA08G20300.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G72730.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCAGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttg---ttgttttgattagttcccacattttcatatttagtgcactaatttattcttggttgtctgtcctatacttgttgactatcctacttcttgtgttg
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CTTTGACTTGTTACGCAGACAATCCCTCCGTGCTGATGCAATCAAAATGTTTGTTCTTGATGAAGCTGATGAAATGCTCTCTCGTGGTTTCAAGGATCAGgtttaatcttgtttaatctcccattcacattttctttttctct---ctgataaaatca-agtcatttgttct-tataatttgatttctctgtcag--------
upper sequence: GLYMA08G20300.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g01760.t01 (Vitis vinifera), 5'ss of exon 4
GTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCAGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgttttg---------------attagttcccacatttt--catattt---agtgcactaatttattct--tggttgtctgt--cctatacttgttgactatc-ctacttcttgtgttg-----------------------------------------------------------------
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GTTTGACATGTTGCGGAGACAGTCACTTCGCCCAGATTACATTAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttctattatatctctgtttctttactagttgtaatatttttgcatacttcatggtgaagaacattattttgctaattgttagaagttcatgctcattgcttattgctggatttttcaatatgtgcaagttttgactggctttgttgtttttctgataattcattaattttttttgctgctgtcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4305076|gb|AI443710.1|AI443710EST: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGA--AG AGTGGAAGCTGGAGACATTATGTGACCTTTATGAGACTCTGGCTATCACTC
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgtt ... gacaaggaagAGTGGAAGCTGGAGACATTATGTGACCTTTATGAGACTCTGGCTATCACTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCAGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGgtttgttgttttgattagttcccacattttcatatttagtgcactaatttattcttggttgtctgtcctatacttgttgactatcctacttcttgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT