1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGATTTGAGGGCATATTGGGTGGCAAGATTGACAAGGCTGTTGCATTTGAAGAGGTTTTGGTGCTTTCTAGCTTCATGTGCAAAGCAAGCCAGgtatgttttgggcttgttttgaactagttactactgcaaaggggtgtgtgtgttttttcatgtggaggagcacaccagcatggtttaggaagcacaggca...
species | Glycine max |
transcript | GLYMA08G18720.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATTTGAAGAGGTTTTGGTGCTTTCTAGCTTCATGTGCAAAGCAAGCCAG GATCCCCAACCGGAATATAAGCTCTTTGGCACTATTGTGCATTCAGGCTACEST: gi|19052919|gb|BM731586.1|BM731586
genomic: CATTTGAAGAGGTTTTGGTGCTTTCTAGCTTCATGTGCAAAGCAAGCCAGgtatgttttg ... ctttatgcagGATCCCCAACCGGAATATAAGCTCTTTGGCACTATTGTGCATTCAGGCTAC
EST: CATTTGAAGAGGTTTTGGTGCTTTCTAGCTTCATGTGCAAAGCAAGCCAG GATCCCCAACCGGAATATAAGCTCTTTGGCACTATTGTGCATTCAGGCTAC
genomic: CATTTGAAGAGGTTTTGGTGCTTTCTAGCTTCATGTGCAAAGCAAGCCAGgtatgttttg ... ctttatgcagGATCCCCAACCGGAATATAAGCTCTTTGGCACTATTGTGCATTCAGGCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATTTGAGGGCATATTGGGTGGCAAGATTGACAAGGCTGTTGCATTTGAAGAGGTTTTGGTGCTTTCTAGCTTCATGTGCAAAGCAAGCCAGgtatgttttgggcttgttttgaactagttactactgcaaaggggtgtgtgtgttttttcatgtggaggagcacaccagcatggtttaggaagcacaggca
- - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggagg