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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAGgtatgatgaagttatgcagttgcagaaaaattccttcaaagattcatgactcataacttaaatgaacttaatatttatatttagctttgagacttggccc...

Basic information

species Glycine max
transcript GLYMA08G18410.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18410.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G65700.1 (Arabidopsis thaliana), 5'ss of exon 4
GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAGgtatgatgaagttatgcagttgcagaaaaattccttcaaagattcatgac--tcataacttaaatgaacttaatatttatatttagctttgagacttggccc
||||| || ||||||||||||||||| |||||||| || |||||||| || |||||||| || | ||| ||||||||  | |   | | | | |||  | |  | || | ||  |  ||   ||   |  ||| || ||||     || ||  || |||      |  | |||||| 
GGAGTTCTTAAAGGTTTTGACCAGGCTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttctgat-tcctgttttaaagtattttcatctgaacttttcgatgttactaaattgaatgggtgcaa-atacatttttctgcaagtaaattggcca

upper sequence: GLYMA08G18410.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0039g00240.t01 (Vitis vinifera), 5'ss of exon 4
GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAGgtatga----tgaagtta--tgcagttgcagaaaaattccttcaaagattcatgactcataacttaaatgaacttaatatttatatttagctttgagacttggccc
||||| || || || ||||||||||| || ||||| ||||||||||| || ||||| || ||||| || |||||||| ||     | ||  ||  |  | ||  | | ||||||| |       |  |||    ||    |   | |  | || |  |  || |      | |        
GGAGTTCTAAAGGGCTTTGACCAGGCTACCAATATCATTCTTGATGAATCTCATGAGCGTGTTTACTCCACAAAGgtttgtgtccttaacatacttctaattttatagaaattcccttcctttgttttgatctgtagaaaatggggaaatcatgtaaagcttcactaacaaaaaa------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406500|gb|EV276315.1|EV276315
EST:     CAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAG                         GAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAAT
genomic: CAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAGgtatgatgaa ... ctaactacagGAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAAT