1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACTGATGGCCAATGGCCTGCTGCAGTCGAACAACCCTGGACTGAAGAAGCTCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaattattgaattgattttggatacgtgcttgatgattatgtcagattaagttatatatgcattgttcttatgataatgtttaaatgagttcatct...
species | Glycine max |
transcript | GLYMA08G17000.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATEST: gi|193364936|gb|FK333193.1|FK333193
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGAT
EST: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCEST: gi|21676810|gb|BQ629161.1|BQ629161
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
EST: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCEST: gi|58022037|gb|CX708778.1|CX708778
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
EST: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCEST: gi|9900814|gb|BE609782.1|BE609782
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
EST: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCEST: gi|208111416|gb|GD909134.1|GD909134
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
EST: ACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCEST: gi|208311817|gb|GE109039.1|GE109039
genomic: ACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
EST: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCEST: gi|23052768|gb|BU577259.1|BU577259
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
EST: TCCACAACCAATCTCAACAACTCCTACTAACTGGACACCAGAAACAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAACTCCAGTTCEST: gi|6719412|gb|AW307059.1|AW307059
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
EST: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCEST: gi|192304648|gb|FG994940.1|FG994940
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
EST: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCEST: gi|27425246|gb|CA936766.1|CA936766
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
EST: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCEST: gi|22541018|gb|BU090861.1|BU090861
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
EST: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCEST: gi|6952276|gb|AW424344.1|AW424344
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
EST: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCEST: gi|15663310|gb|BI700681.1|BI700681
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
EST: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCEST: gi|192304647|gb|FG994939.1|FG994939
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
EST: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCEST: gi|58020333|gb|CX707075.1|CX707075
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
EST: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCEST: gi|6846843|gb|AW349133.1|AW349133
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
EST: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTG CTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
genomic: TCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaatta ... cctcttacagCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGATGGCCAATGGCCTGCTGCAGTCGAACAACCCTGGACTGAAGAAGCTCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGgtacgaattattgaattgattttggatacgtgcttgatgattatgtcagattaagttatatatgcattgttcttatgataatgtttaaatgagttcatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG