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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCTTTTCTTTTTACTGTGGTTGGAACAACAGGATTTCTGGGTGTTCTGGCTGGGCAACTTCCCGGGgtatcactagcacacttgtgttttgctctgtatgtctgtttaatgatatagtgttgaagcatgcatttgtaaatgcagatatgccagtcattttgcttgc...

Basic information

species Glycine max
transcript GLYMA08G14970.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14970.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0031g01560.t01 (Vitis vinifera), 5'ss of exon 4
GCAGCTTTTCTTTTTACTGTGGTTGGAACAACAGGATTTCTGGGTGTTCTGGCTGGGCAACTTCCCGGGgtatcactagcacacttgtgttttgctctgtatgtctgtttaatgatatagtgttgaagcatgcatttg-taaatgcagatatgccagtcattttgcttgc---
||||||||||||||||| || || || |||||||||||| | |||||||| ||||| || ||||| |||||| |  ||  |  ||  |   |   | | | | | ||| |    ||||  |  |  |   || |||||   | |  |  || |  || |  |   | ||    
GCAGCTTTTCTTTTTACGGTAGTGGGGACAACAGGATTTTTAGGTGTTCTTGCTGGCCAGCTTCCTGGGgtaac-ttaatattctcatccatctatttattt-tgtgtatgtgtatattatcatttaaagtgtatttgacgagtctaactagg--aggccctccacatgtttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295227|gb|FG986946.1|FG986946
EST:     TGGTTGGAACAACAGGATTTCTGGGTGTTCTGGCTGGGCAACTTCCCGGG                         GATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCATTAGTGGTT
genomic: TGGTTGGAACAACAGGATTTCTGGGTGTTCTGGCTGGGCAACTTCCCGGGgtatcactag ... aatcttgtagGATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCATTAGTGGTT
EST: gi|192316483|gb|FK006774.1|FK006774
EST:     GGGCAACTTCCCGGG                         GATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCATTAGTGGTT
genomic: GGGCAACTTCCCGGGgtatcactag ... aatcttgtagGATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCATTAGTGGTT
EST: gi|120532690|gb|EH260823.1|EH260823
EST:     TGGTTGGAACAACAGGATTTCTGGGTGTTCTGGCTGGGCAACTTCCCGGG                         GATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCATTAGTGGTT
genomic: TGGTTGGAACAACAGGATTTCTGGGTGTTCTGGCTGGGCAACTTCCCGGGgtatcactag ... aatcttgtagGATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCATTAGTGGTT
EST: gi|209700580|gb|BW670408.1|BW670408
EST:     TGGTTGGAACAACAGGATTTCTGGGTGTTCTGGCTGGGCAACTTCCCGGG                         GATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCATTAGTGGTT
genomic: TGGTTGGAACAACAGGATTTCTGGGTGTTCTGGCTGGGCAACTTCCCGGGgtatcactag ... aatcttgtagGATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCATTAGTGGTT
EST: gi|192316482|gb|FK006773.1|FK006773
EST:     GGGCAACTTCCCGGG                         GATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCATTAGTGGTT
genomic: GGGCAACTTCCCGGGgtatcactag ... aatcttgtagGATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCATTAGTGGTT
EST: gi|120533478|gb|EH261611.1|EH261611
EST:     TGGTTGGAACAACAGGATTTCTGGGTGTTCTGGCTGGGCAACTTCCCGGG                         GATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCATTAGTGGTT
genomic: TGGTTGGAACAACAGGATTTCTGGGTGTTCTGGCTGGGCAACTTCCCGGGgtatcactag ... aatcttgtagGATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCATTAGTGGTT