1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTTTGGTTGAACTCGCCGAGCTTCAGGATCGAGAAGTCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAAgtaactaactacatctctctctctatttatttggcactttgtttgtgttttgtgtttgtctctgatgtaactaactgtcgagtgtgagtgttttttcctgcag
species | Glycine max |
transcript | GLYMA08G12970.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAA AGGGCAAATGACCTCGTCAGGAACAAGATTCATCCTACCTCGATTATCAGTEST: gi|208197847|gb|GE001197.1|GE001197
genomic: TCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAAgtaactaact ... tttcctgcagAGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATCAGT
EST: TCGGAGACGGCACTACTTCGGTCGTCATTGTCGCTGCTGAGCTTCTCAAA AGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATCAGTEST: gi|24205364|gb|BU964617.1|BU964617
genomic: TCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAAgtaactaact ... tttcctgcagAGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATCAGT
EST: TCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAA AGGGCAAATGACCTCGTCAGGAACAAGATTCATCCTACCTCGATTATCAGTEST: gi|208206127|gb|GE004144.1|GE004144
genomic: TCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAAgtaactaact ... tttcctgcagAGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATCAGT
EST: TCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAA AGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATEST: gi|6070782|gb|AW100169.1|AW100169
genomic: TCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAAgtaactaact ... tttcctgcagAGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTAT
EST: TCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAA AGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATCAGTEST: gi|207810478|gb|GD782484.1|GD782484
genomic: TCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAAgtaactaact ... tttcctgcagAGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATCAGT
EST: TCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAAA AGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATCAGEST: gi|120533836|gb|EH261969.1|EH261969
genomic: TCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTC-AAAgtaactaact ... tttcctgcagAGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATCAG
EST: TCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAA AGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATCAGTEST: gi|18040032|gb|BM308326.1|BM308326
genomic: TCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAAgtaactaact ... tttcctgcagAGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATCAGT
EST: TCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAA AGGGCAAATGACCTCGTCAGGAACAAGATTCATCCTACCTCGATTATCAGT
genomic: TCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAAgtaactaact ... tttcctgcagAGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTGGTTGAACTCGCCGAGCTTCAGGATCGAGAAGTCGGAGACGGCACTACTTCTGTCGTCATTGTAGCTGCTGAGCTTCTCAAAgtaactaactacatctctctctctatttatttggcactttgtttgtgttttgtgtttgtctctgatgtaactaactgtcgagtgtgagtgttttttcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT