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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTCTTAGCACAATGAGAGCAGTCCAAGGAGCTCTAATAGTAGCTTCAAGCATACAAATAATTTTGGGATTTAGTCAAATATGGGCTATTTGTTCTAGgtgagttttattttatgtaaaatgcaatgtatactttagcatgaaacttgaataccgcatttaatatatatgtaataattaatgtccttttcctttatattcag

Basic information

species Glycine max
transcript GLYMA08G12360.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12360.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0003g01460.t01 (Vitis vinifera), 5'ss of exon 4
GATTTCTTAGCACAATGAGAGCAGTCCAAGGAGCTCTAATAGTAGCTTCAAGCATACAAATAATTTTGGGATTTAGTCAAATATGGGCTATTTGTTCTAGgtgagttttattttatgtaaaatgca-atgtatactttagcatg-aaacttgaataccgcatttaatatatatgtaataattaatgtccttttcctttatattcag
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GATTTCTCAATACCATGAGAGCAATCCAAGGTGCTCTGATAGTGGCATCAAGCATACAAATTATTCTGGGGTACAGTCAAATATGGGCCATCTGTTCGAGgtaaa---------atgaaagttgtacattcataatcaagaaaatgagctttactggtagattttctttgtgttcaaatgtggacattttttggtgtctcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207706800|gb|GD687068.1|GD687068
EST:     AGCATACAAATAATTTTGGGATTTAGTCAAATATGGGCTATTTGTTCTAG                         ATTTTTCAGCCCACTTGGAATGGTTCCA
genomic: AGCATACAAATAATTTTGGGATTTAGTCAAATATGGGCTATTTGTTCTAGgtgagtttta ... ttatattcagATTTTTCAGCCCACTTGGAATGGTTCCA