1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GACTCAACAATCCTGAATGATAACGGGACACTGACTTCAGTGAATGGTAACTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaagtcctgttgtcaaacattgtcgttaattatgtttagttagatgttacaaatctgagaatcctctttgctgcag
species | Glycine max |
transcript | GLYMA08G11590.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGEST: gi|193645405|gb|FK590821.1|FK590821
genomic: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
EST: AGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGEST: gi|208209586|gb|GE001855.1|GE001855
genomic: AGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
EST: AGGAGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCATACTTGGEST: gi|151401990|gb|EV271803.1|EV271803
genomic: AGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
EST: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGEST: gi|207830973|gb|GD805031.1|GD805031
genomic: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
EST: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGEST: gi|208089758|gb|GD889147.1|GD889147
genomic: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
EST: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGEST: gi|193315804|gb|FK281856.1|FK281856
genomic: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
EST: AGCTGATGATAACCCAG GATGGATATCAGTAGG-AAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGEST: gi|193402587|gb|FK368085.1|FK368085
genomic: AGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGT-GGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTG
EST: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG GATGGATATCAGTGG-AAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGEST: gi|193623696|gb|FK578210.1|FK578210
genomic: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
EST: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGEST: gi|193358951|gb|FK325381.1|FK325381
genomic: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
EST: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGEST: gi|193411960|gb|FK379949.1|FK379949
genomic: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
EST: CTACAAGTCAGAAGAGTCAAGTGAAAATGCGGGAGCTGATGATAACCCAG GATGGATATCAEST: gi|207729670|gb|GD707762.1|GD707762
genomic: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCA
EST: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGEST: gi|193520532|gb|FK475107.1|FK475107
genomic: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGG
EST: AGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGGAAGNGGAAAGTATTAAGCAAACTTGGEST: gi|193670095|gb|FK608635.1|FK608635
genomic: AGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
EST: AGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGEST: gi|193709028|gb|FK648598.1|FK648598
genomic: AGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
EST: AGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGEST: gi|208173942|gb|GD966825.1|GD966825
genomic: AGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
EST: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACTCAG GATGGATATCAGTAGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGEST: gi|208160228|gb|GD953484.1|GD953484
genomic: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGT-GGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTG
EST: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGEST: gi|26057130|gb|CA800044.1|CA800044
genomic: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
EST: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAEST: gi|208096729|gb|GD892926.1|GD892926
genomic: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAA
EST: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG GATAGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGEST: gi|208330313|gb|GE132230.1|GE132230
genomic: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
EST: AAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGGEST: gi|193430744|gb|FK396434.1|FK396434
genomic: AAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
EST: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG GATGGATATCACGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGEST: gi|208045636|gb|GD838938.1|GD838938
genomic: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCA-GTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTG
EST: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG GATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
genomic: CTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgctgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGGAAAGTATTAAGCAAACTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTCAACAATCCTGAATGATAACGGGACACTGACTTCAGTGAATGGTAACTACAAGTCAGAAGAGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaagtcctgttgtcaaacattgtcgttaattatgtttagttagatgttacaaatctgagaatcctctttgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT