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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGgtctttctgtctcatttcgtcccatctttctaatttctatcactttgcagttaattgctattgcttatttccactaaaagaacatgagggaaaagaaggaaagggtatattgtctttgatatggaatgttgttgcatttttcag

Basic information

species Glycine max
transcript GLYMA08G10990.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G10990.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G025042_T01 (Zea mays), 5'ss of exon 4
GGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGgtctttc-tgtctcatttcgtcccatctttctaatttctatcactttgcagttaattgctattgcttatttccactaaaagaacatgagggaaaagaaggaaagggtatattgtctttgatatggaatgttgttgcatttttcag
||    ||    || || ||||| ||  | || |||||||| |||||||| |||||||| ||||  |||||||||||||| |||||      | |||| |||  ||  || | | ||      |  |  |  |  ||   ||   ||| || |||    |      |  | |         |                                               
GGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtttctcctttattcaaatgtctttaccagaaaaaatatgcctattttctgagtttgttttttttt-ttgtgttcatttcatttttgtacaccc--------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525286|gb|BU084097.1|BU084097
EST:     AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAG                         GTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
genomic: AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGgtctttctgt ... catttttcagGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
EST: gi|5606926|gb|AI901024.1|AI901024
EST:     AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAG                         GTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
genomic: AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGgtctttctgt ... catttttcagGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
EST: gi|7796482|gb|AW781879.1|AW781879
EST:     AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAG                         GTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATAT
genomic: AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGgtctttctgt ... catttttcagGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATAT
EST: gi|20811540|gb|BQ296018.1|BQ296018
EST:     AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAG                         GTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
genomic: AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGgtctttctgt ... catttttcagGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
EST: gi|21888824|gb|BQ742037.1|BQ742037
EST:     AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAG                         GTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
genomic: AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGgtctttctgt ... catttttcagGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
EST: gi|6481967|gb|AW201238.1|AW201238
EST:     AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAG                         GTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
genomic: AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGgtctttctgt ... catttttcagGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT