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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTAAACCAAATTGTGTATGAACTTCCTGCTGAGCATCCTCTGGCCGAAAGCAGACCACTTCGCGAACTTCTTGGGCACACCCCCCCTCAGgttctcatttttcatacgattgcttcctataattatgtgatggacctaagttttaccaatgaaattcagtgcaccctagaatgacactgcttcaaaatgt...

Basic information

species Glycine max
transcript GLYMA08G10790.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G10790.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0010g02580.t01 (Vitis vinifera), 5'ss of exon 4
GTTTTAAACCAAATTGTGTATGAACTTCCTGCTGAGCATCCTCTGGCCGAAAGCAGACCACTTCGCGAACTTCTTGGGCACACCCCCCCTCAGgttctcatttttcatacgattgcttcctataattatgtgatggacctaagt--tttaccaatgaaattcagtgcaccctagaatgacactgcttca-aaatgt-
||| | || |||||||| ||||| || |||||||||||||||||||| ||||||| |||||| || ||||||||||| ||||| || |||||||||      || ||   |||| | |  |  |  ||  |      ||||  |    || |||| |   ||| ||      |  || | | |  |    |||||  
GTTCTGAATCAAATTGTTTATGAGCTCCCTGCTGAGCATCCTCTGGCTGAAAGCATACCACTGCGGGAACTTCTTGGCCACACTCCTCCTCAGgtttggtcattgcactagattacctt-tgcatctaaattgatatcctacataacatatcaatta---tcattgacagtaatgatcaaaatattctgcaaatgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151399370|gb|EV269241.1|EV269241
EST:     TGGCCGAAAGCAGACCACTTCGCGAACTTCTTGGGCACANNNNNNNTCAG                         GTCATTGTCGGTGGGATACTTGGACTTTTAACAGCAATTGGCCTTTTAAGA
genomic: TGGCCGAAAGCAGACCACTTCGCGAACTTCTTGGGCACACCCCCCCTCAGgttctcattt ... catattgcagGTCATTGTCGGTGGGATACTTGGACTTTTAACAGCAATTGGCCTTTTAAGA
EST: gi|6964295|gb|AW432988.1|AW432988
EST:     TGGCCGAAAGCAGACCACTTCGCGAACTTCTTGGGCACANNNNNNNTCAG                         GTCATTGTCGGTGGGATACTTGGACTTTTAACAGCAATTGGCCTTTTAAGA
genomic: TGGCCGAAAGCAGACCACTTCGCGAACTTCTTGGGCACACCCCCCCTCAGgttctcattt ... catattgcagGTCATTGTCGGTGGGATACTTGGACTTTTAACAGCAATTGGCCTTTTAAGA