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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAAGAGAAGATGAATGTGGCATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattcatattagacatgcatatttagtcgccttactttatattcaaattggtttatcatcattttttttgtgaacaatggtcgcactgaggttcg...

Basic information

species Glycine max
transcript GLYMA08G10630.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G10630.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os07g17400.2 (Oryza sativa), 5'ss of exon 4
TGGAAAGAGAAGATGAATGTGGCATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgta-----ttcata--ttagacatgcatatt--tagtcgc--cttactttatattcaaattggt-ttatcatcattttttttgtgaacaatggtcgcactgaggttcg
||||||| || ||||||||||| || ||| | ||| | |||||||| |||||| ||||||||||| ||||||| ||||| || ||||||||| |  | |||||  ||     |||| |  |||      | ||||   ||| ||  | | |||   |||   ||   | || | | | ||| |||| ||||| |||   |            
TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagtattttcacaacttaattgcacttattgacagtagcaacctgcttgcaatttggatacatattctgagcctttcttttctgaactatg-cagt-----------

upper sequence: GLYMA08G10630.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os07g17400.1 (Oryza sativa), 5'ss of exon 4
TGGAAAGAGAAGATGAATGTGGCATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgta-----tgtattcata--ttagacatgcatatt--tagtcgc--cttactttatattcaaattggt-ttatcatcattttttttgtgaacaatggtcgcactgaggttcg
||||||| || ||||||||||| || ||| | ||| | |||||||| |||||| ||||||||||| ||||||| ||||| || ||||||||| |  | |||||     | | |||| |  |||      | ||||   ||| ||  | | |||   |||   ||   | || | | | ||| |||| ||||| |||                
TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagtattttcacaacttaattgcacttattgacagtagcaacctgcttgcaatttggatacatattctgagcctttcttttctgaactatgcag-------------

upper sequence: GLYMA08G10630.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G13195.1 (Arabidopsis thaliana), 5'ss of exon 4
TGGAAAGAGAAGATGAATGTGGCATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattcatattagacatgcatatttagtcgccttactttatattcaaattggtttatcatcattttttttgtgaacaatggtcgcactgaggttcg
| ||  | ||||| ||||| || || || |||||  |||||||||||||||| ||||||||||| || ||| | ||||| ||||||||||| ||||| |||||| ||  || |  | || |     |||     ||||  |          |||   | |   || ||  || |   | |    |               
TAGAGCGTGAAGAAGAATGCGGTATCTGTTTAGAAACTTGCACCAAAATGGTGTTGCCTAATTGTTGCCATTCTATGTGCATCAAATGCTATCGCAATTGgtatatacacacac-acactttttagtttttagacctttttgacctgatgcatttactgaatctcgttgattctcaaatctgcag---------------

upper sequence: GLYMA08G10630.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
TGGAAAGAGAAGATGAATGTGGCATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattca--tattagacatgcatatttagtcgccttacttta----tattcaaattggtttatcatcattttttttgtgaacaatggtcgcactgaggttcg------------------
|| |||| |||||||||||||| || || || |||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||  | ||||| ||    |  ||  ||   || || ||   |   ||  || ||    | | ||| |   |  || |   | |    ||  |    |  |  ||||     ||                   
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttattctgtctctaacactttccaactgcatacatgagattctagactgctatttttctttacactcttcctcttctttatccaaattacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209706224|gb|BW680915.1|BW680915
EST:     GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTG                         GAACACAAGGTCAGAATCTTGTCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
genomic: GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattc ... caacttgcagGAACACAAGGTCAGAATCTTGTCCTTTTTGCCGTGGTAGCTTAAGGAGAGT