Sequence
atgc intronic sequence ATGC exonic sequenceTGAGAAGCCATTCCTTGAGTGCACATCCGAATTTTATGCGGCGGAAGTTATGAAATACATGCAGCAATCAGATGCTCCAGATTACTTGAAGCATGTTGAGgtgcttcttttccctttcttttgtgtattataattttagctttaatcattgacattcctatgtgctgcttttgtaacttttaacaaatggatcatgccaa...
Basic information
species | Glycine max |
transcript | GLYMA08G10180.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G704093_T02 (Zea mays), 5'ss of exon 4
TGAGAAGCCATTCCTTGAGTGCACATCCGAATTTTATGCGGCGGAAGTTATGAAATACATGCAGCAATCAGATGCTCCAGATTACTTGAAGCATGTTGAGgt---gcttcttttccctttcttttgtgtattataattttagctttaatcattgacattcctatgtgctgcttttgtaacttttaacaaatggatcatgccaa
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TGAAAAGCCCTTTCTTGAGTGCACTTCTGAATTTTATGCTACGGAAGGTGTTAAATATATGCAACAATCTGATATTCCAGACTACCTGAAGCATGTAGAGgtaaggatagatttccttatattcttcatattatttactcatgtagaacca--ggcaggcaca----ccatttaactgataatatgcacctgagctgtgcag-
upper sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G46210.1 (Arabidopsis thaliana), 5'ss of exon 4
TGAGAAGCCATTCCTTGAGTGCACATCCGAATTTTATGCGGCGGAAGTTATGAAATACATGCAGCAATCAGATGCTCCAGATTACTTGAAGCATGTTGAGgtgcttcttttccctttcttttgtgtattataattttagctttaatcattgacattcctatgtgctgcttttgtaacttttaacaaatggatcatgccaa
|||||| || |||||||| | || || ||||||||||| || |||| ||||||||||||||||| || || | ||| || ||| |||||||||||||||||| | | ||| | | || | | || |||||| | | ||| || || || | ||| || || | |||
TGAGAAACCTTTCCTTGAAGGGACCTCTGAATTTTATGCCGCTGAAGGAATGAAATACATGCAGCAGTCTGACGTTCCGGAGTACCTGAAGCATGTTGAGgtgccttgcatgacttcatatagtttcct-tatgattagctgcact-----acaggttaatagtct---ttctaaggtttctactggtgattggtgcag-
upper sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 4
TGAGAAGCCATTCCTTGAGTGCACATCCGAATTTTATGCGGCGGAAGTTATGAAATACATGCAGCAATCAGATGCTCCAGATTACTTGAAGCATGTTGAGgtgcttcttttccctttcttttgtgtattataattttagctttaatcattgacattcctatgtgctgcttttgtaactt-ttaacaa-atggatcatgccaa---------------------------------------------------------------------------
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TGAGAAGCCATTCCTCGAGTGTACGTCTGAATTTTATGCTGCTGAAGGCATGAAATACATGCAGCAATCAGATGTTCCGGATTACTTGAAACATGTGGAGgtgcaatttgttt-tttcttctac-tactataagtgatattctctgctctttctcacct-tttattgtatttctagtttattggctgtgcaaatcacatttatattctagctgacagaatgttcattcacaatttatgttcacgtctagaagatatgagggtgatgctttcttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193537739|gb|FK497672.1|FK497672EST: TGAAATACATGCAGCAATCAGATGCTCCAGATTACTTGAAGCATGTTGAG ACAAGATTGCAAGAGGAACATGAAAGATGTTTGTTGTACTTGGATGCAAGT
genomic: TGAAATACATGCAGCAATCAGATGCTCCAGATTACTTGAAGCATGTTGAGgtgcttcttt ... ttttttatagACAAGATTGCAAGAGGAACATGAAAGATGTTTGTTGTACTTGGATGCAAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGAAGCCATTCCTTGAGTGCACATCCGAATTTTATGCGGCGGAAGTTATGAAATACATGCAGCAATCAGATGCTCCAGATTACTTGAAGCATGTTGAGgtgcttcttttccctttcttttgtgtattataattttagctttaatcattgacattcctatgtgctgcttttgtaacttttaacaaatggatcatgccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctttc