Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTAAGGAAGATGATCGGGCCATTTTGCTGGAATCAGGGCTTACAAGATCAGCATCAGCAAAATTCCATCCATCATCTGTCAAATTGAATTTGATTCGgtcattttctacaataaatttttcatggggttctttctgttttctagctttatctttaaagatccttacctttttactttccatttgtag

Basic information

species Glycine max
transcript GLYMA08G08730.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0003g02820.t01 (Vitis vinifera), 5'ss of exon 3
CAATTAAGGAAGATGATCGGGCCATTTTGCTGGAATCAGGGCTTACAAGATCAGCATCAGCAAAATTCCATCCATCATCTGTCAAATTGAATTTGATTCGgtcatt-ttctacaataaatttttca---tggggttct--------ttctgttttctagctttatctttaaagatccttacctttttactttccatttgtag
|||| ||||||||||||||||| ||||| ||||||  ||| ||||||| ||||||||| ||||| ||| ||   |||||  ||||| |||| || ||| ||| | | ||  | ||||||  | | |   |||||||||        || || | |  | |||| |||| |     | ||   |||||  |||   ||| |||
CAATCAAGGAAGATGATCGGGCTATTTTACTGGAAGGAGGTCTTACAAAATCAGCATCTGCAAAGTTCAATAGTTCATCCATCAAAGTGAACTTAATTAGgttactattggataataaaagtattacagtggggttctgattttggttatgctataaaactttttctt-agcttgcttttttttttttttttttttttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193386222|gb|FK352452.1|FK352452
EST:     TCAGCATCAGCAAAATTCCATCCATCATCTGTCAAATTGAATTTGATTCG                         GTTTTTGACCATGGATGATTTCTTTCTTTGTTAGAAAATCGAGCAACTTTG
genomic: TCAGCATCAGCAAAATTCCATCCATCATCTGTCAAATTGAATTTGATTCGgtcattttct ... ccatttgtagGTTTTTGACCATGGATGATT-CTTTCTT-GTTAGAAAATCGAGCAACTTTG
EST: gi|213590421|gb|DB968041.1|DB968041
EST:     TCAGCATCAGCAAAATTCCATCCATCATCTGTCAAATTGAATTTGATTCG                         GTTTTTGACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAG
genomic: TCAGCATCAGCAAAATTCCATCCATCATCTGTCAAATTGAATTTGATTCGgtcattttct ... ccatttgtagGTTTTTGACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAG