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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGAATTTGTTGATAGATCGCAGCAATAATGCACTAAAACTTGCAGATTTTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgctaccctgtactgggttctgaccttggatataattaaattttgaaattaatgcgcatatgtactagagtataaatactcatgcagcatttt...

Basic information

species Glycine max
transcript GLYMA08G08330.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08330.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g01850.2 (Oryza sativa), 5'ss of exon 4
ACAGAATTTGTTGATAGATCGCAGCAATAATGCACTAAAACTTGCAGATTTTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgt---------ttgtgtgctaccctgtactgggttc------------tgaccttggatataat-taaattttgaaattaatgcgcatatgtactagagtataaatactcatgcagcatttt-----------------
 |||||||| |||||||||||  | | |||| |||| || |||||||| ||||| || || ||||| ||||||||||||||  | |||||||| ||||||||         |||||| | ||  | |  |   |||            |    || |  ||||  |  |||||  | |||       |||  |||||   || ||  | ||       | |                  
TCAGAATTTATTGATAGATCGGCGTACTAATACACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGCACATTTACTCATGAGgtactatagatttgtgttcaacattttgttttcttcataaagtacatttttttttcgtcataaagttcatttttcatttaccttttctatacactagcacattaactcacaatggatgtctatgggaagtatttttcag

upper sequence: GLYMA08G08330.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g02680.1 (Oryza sativa), 5'ss of exon 3
ACAGAATTTGTTGATAGATCGCAGCAATAATGCACTAAAACTTGCAGATTTTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgt---------ttgtgtgctaccctgtactgggttc-----------tgaccttggatataat-taaattttgaaattaatgcgcatatgtactagagtataaatactcatgcagcatttt-----------------
 |||||||| |||||||||||  | | ||||||||| || |||||||| ||||| || || ||||| ||||||||||||||  | || ||||| || |||||         |||||| | ||  | |  |   |||           |    || |  ||||  |  |||||  | |||       |||  |||||   || ||  | ||       | |                  
TCAGAATTTATTGATAGATCGGCGTACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGCACGTTTACTCACGAGgtactatagatttgtgttcaacattttgttttcttcataaagtacattttttttcgtcataaagttcatttttcatttaccttttctatacactagcacattaactcacaatggatgtctatgggaagtatttttcag

upper sequence: GLYMA08G08330.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G143213_T02 (Zea mays), 5'ss of exon 4
ACAGAATTTGTTGATAGATCGCAGCAATAATGCACTAAAACTTGCAGATTTTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgctaccctgtactgggttctgaccttggatataa---ttaaattttgaaattaatgcgcatatgtactagagtataa-atactcatgcagcatttt-----------------------------------------------------------------------------------
 ||||| ||||||||||||||  | ||||||||||| || |||||||| ||||| || || ||||| ||||||||||||||  | |||||||| ||||||||   | |||||  |||      | | | || |  || |      || |||| |   ||||  |   | || |  |   |  |   | | | ||| | |                                                                                        
TCAGAACTTGTTGATAGATCGGCGTAATAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgctatgctgcttattgct-taacttgagaaagggagtttgaattatcctattagggaaaaaatattgtgaggggtgccaaaattatggatcccaccgattttatacccatataacataaccttttgttgtctattctagtcatatcaactcaatacatatctatggaagtatttttcag

upper sequence: GLYMA08G08330.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G008327_T01 (Zea mays), 5'ss of exon 4
ACAGAATTTGTTGATAGATCGCAGCAATAATGCACTAAAACTTGCAGATTTTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgctaccctgta--ctgggttctgaccttggatataattaaattttgaaattaatgcg--catatgtactagagtataaatactcatgcagcatttt----------------------------------------------------------------------------
 || || || |||||||||||  ||| ||||||||| || |||||||| ||||| || || ||||| ||||||||||||||  | |||||||| ||||||||   | || ||  || ||   || |    |   |  ||  |       |   ||||  |||      |    | | | ||| ||   | ||   ||   |||                                                                             
TCAAAACTTATTGATAGATCGGCGCACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgttatgctctaacttgagaaagggagtctgaattgtcctgttagggaaaaaaatattgtgagggatgccaaagt-tatggattcccacaatttttacccgaataacgtaaccttttgctgtatattctagtcacattaattcacagtacatatctatggaagtatttttcag

upper sequence: GLYMA08G08330.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G48750.1 (Arabidopsis thaliana), 5'ss of exon 5
ACAGAATTTGTTGATAGATCGCAGCAATAATGCACTAAAACTTGCAGATTTTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgctaccctgtactgggttctgaccttggatataattaaattttgaaattaatgcgcatatgtactagagtataaatactcatgcagcatttt-----
||||||||||||||| |||||| |||  ||  |||| || ||||| ||||||||| |||| || || || || || ||||| ||||||||||| ||||||||          |  | | |   ||||  |  ||     | || |||| ||     |     ||||   |  | |||| ||| |    ||  || ||| |     
ACAGAATTTGTTGATTGATCGCCGCACAAACTCACTGAAGCTTGCTGATTTTGGACTGGCCAGAGCATTCGGTATCCCTGTCAGGACATTTACTCATGAGgtac-caaagagctttattccttgttcatatgttcc-cgttatgaaatcttttggctggc-tgcattccttat-gagtgtaa-tgtaaattaagtattataccac

upper sequence: GLYMA08G08330.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 5
ACAGAATTTGTTGATAGATCGCAGCAATAATGCACTAAAACTTGCAGATTTTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgttt--gtgtgctaccctgtactgggttctgaccttggatataattaaattttgaaattaatgcgcatatgtactagagtataaatactcatgcagcatttt--
 ||||| ||  | ||||||||  | |  |||||| |||| || ||||| ||||||||||| || || ||||| ||||||||||||||||||||||||||||| |   ||||| | || ||  ||   |||  |    ||| |  ||    |||       ||  |||| | || ||   | | | ||      ||   ||||  
CCAGAACTTACTCATAGATCGTCGTACCAATGCATTAAAGCTGGCAGACTTTGGATTGGCAAGAGCATTTGGTATTCCTGTTAGGACATTTACACATGAGgtatcaatgtgcaatcc-gtg-tgacctcttccacatgattt--ttcctctttacttggtatttgcatctttaataatatttgattatcatatcaattttttgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531799|gb|EH259932.1|EH259932
EST:     TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAG                         GTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
genomic: TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgc ... ttgtttgtagGTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
EST: gi|192318183|gb|FK007213.1|FK007213
EST:     TAGGACATTTACACATGAG                         GTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
genomic: TAGGACATTTACACATGAGgtttgtgtgc ... ttgtttgtagGTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
EST: gi|31307986|gb|CD393189.1|CD393189
EST:     TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAG                         GTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
genomic: TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgc ... ttgtttgtagGTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
EST: gi|192318154|gb|FK007212.1|FK007212
EST:     TAGGACATTTACACATGAG                         GTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
genomic: TAGGACATTTACACATGAGgtttgtgtgc ... ttgtttgtagGTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
EST: gi|120531893|gb|EH260026.1|EH260026
EST:     TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAG                         GTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
genomic: TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgc ... ttgtttgtagGTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
EST: gi|11411903|gb|BF423914.1|BF423914
EST:     TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAG                         GTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
genomic: TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgc ... ttgtttgtagGTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
EST: gi|120531742|gb|EH259875.1|EH259875
EST:     TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAG                         GTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
genomic: TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgc ... ttgtttgtagGTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
EST: gi|18038935|gb|BM307229.1|BM307229
EST:     TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAG                         GTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
genomic: TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgc ... ttgtttgtagGTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
EST: gi|13790009|gb|BG652600.1|BG652600
EST:     TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAG                         GTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
genomic: TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgc ... ttgtttgtagGTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
EST: gi|7684881|gb|AW755529.1|AW755529
EST:     TTGGATTGGGTAGGGCTTTTGGAATTGCTGTTAAGACATATACACATGAG                         GTGGGGACACTGTGGTACAGAGCT
genomic: TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgc ... ttgtttgtagGTGGTAACACTGTGGTACAGAGCT
EST: gi|11688056|gb|BF595732.1|BF595732
EST:     TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAC                         GTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT
genomic: TTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgc ... ttgtttgtagGTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCAT