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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGgtatgtttactttcttttgagagaactacattaacagtcattttttttgttgatatgtggtaagttatattccatttatgtgcctcaaatgtgtttcag

Basic information

species Glycine max
transcript GLYMA08G07670.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07670.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0028g00460.t01 (Vitis vinifera), 5'ss of exon 4
GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGgtatgtttactttcttttgagagaactacattaacagtcattttt--tttgttgatatgtggtaagttatattccatttatgtgcctcaaatgtgtttcag
||||| ||   ||||||  | ||  ||||||||||||| ||||| || || |||||||||||||||||||| |||||||| |||||||||||||||    | ||||| ||     ||| || |||      |||||     |  ||| |||||   || |||| || | | ||| | | ||   |   ||| ||
GCACTTGAAATGGTGCTTCTCGATCTTCCTGGTCTTCTATTTTTCTCAACATATACATTACTTGTCTTGTTTTGGGCTGAAATATATCACCAGgtaatccttctttcattgttttgaaatatatt-----ccatttccagctaattgctatgtttaaatttat-tttcttatattttcatccttttctttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307419|gb|FK000761.1|FK000761
EST:     NNNCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAG                         GCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAAT
genomic: TTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGgtatgtttac ... tgtgtttcagGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAAT
EST: gi|11275013|gb|BF325337.1|BF325337
EST:     NNNCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAG                         GCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAAT
genomic: TTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGgtatgtttac ... tgtgtttcagGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAAT
EST: gi|163926925|gb|EH038506.1|EH038506
EST:     NNNCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAG                         GCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTGTTATCAAT
genomic: TTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGgtatgtttac ... tgtgtttcagGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAAT
EST: gi|213601479|gb|DB970409.1|DB970409
EST:     NNNCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAG                         GCCAGAAGTGAACCGGCACAGA
genomic: TTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGgtatgtttac ... tgtgtttcagGCCAGAAGTGAACCGGCACAGA
EST: gi|298185371|gb|HO030584.1|HO030584
EST:     NN-CTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAG                         GCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAAT
genomic: TTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGgtatgtttac ... tgtgtttcagGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAAT
EST: gi|298173449|gb|HO016785.1|HO016785
EST:     NNNCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAG                         GCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAAT
genomic: TTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGgtatgtttac ... tgtgtttcagGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAAT