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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATCATGGATAGAGGCACTGATGCGCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTCGGTGTTGTGAATCGTAGTCAAGAGgtaattatgttatcctaccagttcataatagcttgctggaaaattagttggctggcttgctgttttttaaagaattggttggttggctggcttgctgattgtatgtgtaatgctgaaatttacttgtttgttttaacgtcaaattag

Basic information

species Glycine max
transcript GLYMA08G07160.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os04g31190.1 (Oryza sativa), 5'ss of exon 4
GGATATCATGGATAGAGGCACTGATGCGCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTCGGTGTTGTGAATCGTAGTCAAGAGgtaattatgttatcctaccagttcataatagcttgctggaaaattagttggctggcttgctgttttttaaagaattggttggttggctggcttgctgattgtatgtgtaatgctgaaatttacttgtttgttttaacgtcaaattag
||| |||||||| || ||||||||||| || ||  | || || ||||| || || ||||||   ||||||||||| |||||||| |||||||| |||||||||          ||| | |    | |||| | ||    ||  ||  || | | |  |    | ||     |||||  ||  | |    | |   |  |   |  ||  |||   |  |||  |                       
GGACATCATGGACAGGGGCACTGATGCTCGTAACTTTTTACTGGGAAATGTGATCCCCCTCAAGCTTGGTTATGTAGGTGTTGTAAATCGTAGCCAAGAGgta----------ccttctaag--acaataccatg----aaccttcattagattgactatcatctt-----gaatttcttcttcga---gttccatagtctcacatgatatgacaatgtttttt-----------------------

upper sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G14120.2 (Arabidopsis thaliana), 5'ss of exon 4
GGATATCATGGATAGAGGCACTGATGCGCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTCGGTGTTGTGAATCGTAGTCAAGAGgtaa-ttatgttatcctaccagttcataatagcttgctggaaaattagttggctggcttgctgttttttaaagaattggttggttggctggcttgctgattgtatgtgtaatgctgaaatttacttgtttgttttaacgtcaaattag
|||||| ||||| ||||| |||||||| |||||||   | || ||||||   ||||| || |||||||| || || || ||||| |||||||||||||||||||    |||| | | |  | || |     | || ||    |  ||  | | |    | ||    ||   ||   ||     ||  ||   ||  || |||                                              
GGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAGAGgtaaaccctgtttttcaaaaaatttacgcatgtttacttatgatgtatattgttcttgtcctaccattatgagctgtgaccactt--ctacttttgtgcttg----------------------------------------------

upper sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
GGATATCATGGATAGAGGCACTGATGCGCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTCGGTGTTGTGAATCGTAGTCAAGAGgtaattatgttatcctaccagttcataatagcttgctggaaaattagttggctggcttgctgttttttaaagaattggttggttggctggcttgctgattgtatgtgtaatgctgaaatttacttgtttgttttaacgtcaaattag
||| || ||||| ||||| || ||||| || ||| | ||||| |||||||| |||||||| |||||||||||  | |||||||||||||||||||||||||||||  ||  ||        ||  |  |||       ||||  || ||  ||   |       |||| |     || |||||| |  ||   ||  |  |     |||| | |||   || ||||                     
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaat--------tttgtggtagt------gaaagataattttctatttatacaccttttgata---tgattggtttg--gggcagccaaagg-----gtaaggttgag--ttccttg---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924507|gb|AW830533.1|AW830533
EST:     GTGAATCGTAGTCAAGAG                         GATATTCTAATGAACCGAAGTATAAAGGATGCTCTTGTTGCTGAAGAGAAG
genomic: GTGAATCGTAGTCAAGAGgtaattatgt ... gtcaaattagGATATTCTAATGAACCGAAGTATAAAGGATGCTCTTGTTGCTGAAGAGAAG