Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTTGAGATGGGTTTAGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAATATGCTTTTGGGATGGGATTGACTCAGgtatgacactttgggtgtgataatggttgtgcaaagaaaatttcttaggccatttcattcattttattcattggttagcttcatctatgctaaagattat...

Basic information

species Glycine max
transcript GLYMA08G06890.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06890.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 4
CTGTTTGAGATGGGTTTAGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAATATGCTTTTGGGATGGGATTGACTCAGgtatgacactttgggtgtgataatggttgtgcaaagaaaatttcttaggccatttcattcattttattcattggttagcttcatctatgctaaagattat------
|| |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||| ||   ||    |  || |  | | | |||     ||| | ||||      ||| |  |||||   | |  || || |  |   ||   ||   | ||      
CTCTTTGAGATGGGTCTCGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAATTTGCTTTTGGCATGGGACTAACTCAGgtttggttctaaaag-atgtttcttggtttgctt--taaactccttacattccttcttatatttt-cacttctgtcagat--aagcatctcaagagtcatcagtga

upper sequence: GLYMA08G06890.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 4
CTGTTTGAGATGGGTTTAGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAATATGCTTTTGGGATGGGATTGACTCAGgtatgacacttt---gggtgtgataatggttgtgcaaagaaa-atttcttaggccatttcattcattttattcattggttagcttcatctatgctaaagattat
|||||||||||||||||||||||||||||||| |||||  | ||||||||||||| ||||||||| |||||||||||||||||| ||   |        |    | |   |||| ||  ||   | |   |  ||   |   |      || | ||  | ||  |||||||    | || |||  
CTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCAAAATTTGCTTTTGGCATGGGATTGACTCAGgtaagatgttgataaaaataaagttaaaattgttcattgagtcagtaggtgtgcagatatgtggccaataattatatgatatattcatct---ttcaacattt-