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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGAAAAAACAGGCATGTTTTTAATGTgtatgtgtgtgtatgcttatctaagctataatcactagtcatggtatttattggttaagtatacttctccaataagcatgcttactatttacctcaattt...

Basic information

species Glycine max
transcript GLYMA08G06160.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 2
---------------CTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGAAAAAACAGGCATGTTTTTAATG--------------Tgtatgtgtgtgtatgcttatctaagctataat--cactagtcatggtatttattggttaagtatacttctccaataagc---atgcttactatttacctcaattt----------------------
               |  |||||||||||||||||||||||||||| ||||| || ||||||||||| || ||||||||||||||||| ||||||||||||     ||||  ||               | || | | | |  | | || |    || |||   ||| |  ||  |  ||  || ||  || |  |  |    | | |   |    || | |||| ||| |||                       
ATGAGGAAGCAGCAGCATTGCAAGAGCAAGTAAGGCAGATAAAGGCCCAGGAAGAAGAATTTGAAACTTTTAATCTAAAGATTGTGCATAGAAAAAACAGgtgctctttttctggtccttaattacttggcatttctttattagttcatttgtattaaaatgatacttggtatcatgcttggtgtttgcgtttgttaatttgtttatctctaacgatattttttaactccattatatcctgctgacaatataacag

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G015073_T01 (Zea mays), 5'ss of exon 2
---------------CTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGAAAAAACAGGCA-TGT-TTTTAATGTgtatgt-gtgtgtatgcttatctaagctataatcactagtcatggtatttattggttaagtatacttctccaataagcatgcttactattt---acctcaattt--------------------------------------------------
               |  ||||||||||||| |||||||||||||| |||||||| || |||||||| |||||||| ||||||||||| |||||||||||| | ||  ||| ||||| | |    | | |     |  ||||   ||||  | |  |  ||||  || |  ||||  |||  | ||    |     || | ||  | |   || | ||  |                                                  
ATGAGGAAGCAGCAGCGTTGCAAGAGCAAGTCAGGCAGATAAAGGCGCAGGAGGAAGAGTTTGAAACGTTCAATCTTAAGATTGTGCATAGAAAAAACAGgtaatgcatttaaatgtttgtcccatattttaatcttactaaagcataaaaaatgat-gtggtgattttcagttatctattgtccttgtgtgcctgtgttcacagtgtggcacttaaacctttttataaagtattttgtgtattctaacattatctcctattaattatcag

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 2
---------------CTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGAAAAAACAGGCATGTTTTTAATGTgtatgt---gtgtgtatgcttatctaagctataatcactagtcatggtatttattggttaagtatacttctccaataagcatgcttactatttacc-tcaattt-------------------------------------------------------
               |  ||||||||||||| |||||||||||||  |||||||| || |||||||| |||||||| ||||||||||| |||||||||||| || || || |  ||  |||    | |||     |   |||   ||||  |   |  |||||| ||    ||||  |||  | ||    |     || | ||  | |  |  | |                                                          
ATGAGGAAGCAGCAGCATTGCAAGAGCAAGTCAGGCAGATAAAGGTGCAGGAGGAAGAGTTTGAAACTTTCAATCTTAAGATTGTGCATAGAAAAAACAGgtattttctttaaatgattgttccatctgttaatcttgttaaagcataaaaaaatgatatggtaatttccagttatctattgtccttgtgtgcctgtgttcacagtgtggcacctacgccgtatttttaaaagatattttatatcttctaacaccgtctcctgttaattaacag

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 2
---------------CTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGAAAAAACAGGCATGTTTTTAATGTgtatgtgtgtgtatgcttatctaagctataatcactagtcatggtatttattggttaagtatacttctccaataagcatgcttactatttacctcaattt-
               |||| ||||||||||| || || || ||||| || |||||||| |||||||||||  | || || ||||||||  ||||||||||| | | |||     |   | | |||         | |||  || | ||| || ||    |||||  || |||   |       |||   |  ||| || || |||  |||   || 
ATGAAGAGGCCGTGGCTGTACAAGAGCAAGTTAGACAAATTAAGGCCCAAGAGGAGGAGTTTGAAACCTTTGACCTCAAAATTGTGCATCGAAAAAACAGgtaagatttctccctaattttttgt---------tttaaattaca-tcagtaatcgctttatttcctgtttagagag------ccacacatgatgttttctttttgtctctgattg

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 2
---------------CTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGAAAAAACAGGCATGTTTTTAATGTgtatgtgtgtgtatgcttatctaagctataatcactagtcatggtatttattggttaagtatacttctccaataagcatgcttactatttacctcaattt
               |||| ||||||||||| || || || ||||| || |||||||| |||||||||||  | || || ||||||||  ||||||||||| | | |||         | |     |||| ||   ||| ||| ||    |||  |  |||   | |    |  ||   |  |  ||  ||||| ||  || |    ||| | | 
ATGAAGAGGCAGTGGCTGTCCAAGAGCAAGTTAGACAAATTAAGGCCCAAGAGGAGGAGTTTGAAACCTTTGACCTCAAAATTGTGCATCGAAAAAACAGgtaagatttctccccaacttt-----tatggtt---taaactaaaacagatag--aaagta---agtaagaagttaccttgtttaaaagagcat-ctgtctctgagtctctact-

upper sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 8
---------------CTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGAAAAAACAGGCATGTTTTTAATGTgtatgtgtgtgtatgcttatctaagctat--aatcactagtcatggtatttattggttaagtatacttctccaataagcatgcttactatttacctcaattt
               |||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| || |||||||| || |||||||||||||| |    |         | || |   |  | ||| ||||  ||| |||  || | ||  ||    |   | ||| |   |   | |   |    | ||||            
ATGAAGAAGCAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAAGCTCAGGAGGAGGAATTTGAGACCTTCAATCTCAAAATTGTGCATAGGAAAAACAGgcatgtctcccct-------catctgaaaaatcttttaaactattaaataactcatcctagttctttgcaggctaatattccattttga-agttacagctgctatcat---------