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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATGTTGCAACTCGGTGGTATCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAAgtaagtttcttcttttttttaacatcttttcttgggttgaatataatttaagcaattgaacatacttggtgtattgaaatatgcatgtaattttaaatttatttcctttttgcag

Basic information

species Glycine max
transcript GLYMA08G05700.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G73670.1 (Arabidopsis thaliana), 5'ss of exon 4
GATTATGTTGCAACTCGGTGGTATCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAAgtaagtttcttcttttttttaacatcttttcttgggttgaatataatttaagcaattgaacatacttggtgtattgaaatatgcatgtaattttaaatttatttcctttttgcag
||||||||||| ||||||||||| ||||| |||||| | ||||| || |||||||||||||||||   ||| |   | | |  |  ||    |   |  | ||   |||||    ||  || |      | | ||  |||       ||  | | |   |||             
GATTATGTTGCTACTCGGTGGTACCGTGCCCCTGAACTCTGTGGATCATTTTTCTCAAAAgtaag---cttataactctcagaagattggact---tctattactgtttaatttcttttacgtctcatttttcttccaatcctttgatatctcttagaatatgatg---------

upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 5
GATTATGTTGCAACTCGGTGGTATCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAAgtaagtttcttcttttttttaac-atcttttcttgggttgaatataatttaagcaattgaacata-cttggtgtattgaaatatgcatgtaattttaaatttatttcctttttgcag-------------------------------------------
|||||||| || ||||||||||||||||| |||||| | ||||| || |||||||| |||||||| ||||| ||      | | | ||  |||||   |   |       | | || ||    ||  ||  | | ||| |  ||   |||  | |    | |||    || |||                                              
GATTATGTAGCTACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAAgtaagattctttttcaccaaacccaactactcttgctatttctccctaccaggaaaatgcttctagttttctattttgtagaatat-tgttgtgt-ggttctatagtgttgttgagaagaccagccatctcaagctaagtctactcttgttatatttcag