1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCATCAGTTACTTCAGTGATGTCTGCAAATGTTCCTGTTGATACACATTTGAGCAGCAATTCTTCTGTAACAAGTAGTTATCAGGCTATAGGGATTCCAGgtaaccttacattttccctcctttgaacaattgagtttgtgactgatttcgtcttttaaaacagcaggagagtttttgataaaattgataaacttagcactgaaatttagttcttctctcgttagatcaatgtttaatcctatgtgattttcatttccttctcactcttggttacttgtatag
species | Glycine max |
transcript | GLYMA08G05390.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGCAGCAATTCTTCTGTAACAAGTAGTTATCAGGCTATAGGGATTCCAG GTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAEST: gi|5342770|gb|AI795054.1|AI795054
genomic: GAGCAGCAATTCTTCTGTAACAAGTAGTTATCAGGCTATAGGGATTCCAGgtaaccttac ... acttgtatagGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCA
EST: GAGCAGCAATTCTTCTGTAACAAGTAGTTATCAGGCTATAGGGATTCCAG GTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCEST: gi|208259384|gb|GE053870.1|GE053870
genomic: GAGCAGCAATTCTTCTGTAACAAGTAGTTATCAGGCTATAGGGATTCCAGgtaaccttac ... acttgtatagGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTC
EST: CTATAGGGATTCCAG GTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTG
genomic: CTATAGGGATTCCAGgtaaccttac ... acttgtatagGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATCAGTTACTTCAGTGATGTCTGCAAATGTTCCTGTTGATACACATTTGAGCAGCAATTCTTCTGTAACAAGTAGTTATCAGGCTATAGGGATTCCAGgtaaccttacattttccctcctttgaacaattgagtttgtgactgatttcgtcttttaaaacagcaggagagtttttgataaaattgataaacttagcactgaaatttagttcttctctcgttagatcaatgtttaatcctatgtgattttcatttccttctcactcttggttacttgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG