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GTCAGCAGCAAATGGAGTAAGACGTGTTTGGATTGGTCAAAATGGATTACTTTCCACTCCTGCAGTATCTGCTGTTATACGTGAAAAACTTGGAGCTGATgtgagtaatgttttctacagtttgcttctcgttgtttgaacttctctttattatgcttagaatgtgttttgtttcctcaaagatgatccatgattttcatagtggaattgcatatggtaacatttttttctcctgaattaaagattaatagtggataaaaaattgtattatctgtacag
species | Glycine max |
transcript | GLYMA08G04890.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTCCACTCCTGCAGTATCTGCTGTTATACGTGAAAAACTTGGAGCTGAT GGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTEST: gi|7146991|gb|AW508913.1|AW508913
genomic: TTTCCACTCCTGCAGTATCTGCTGTTATACGTGAAAAACTTGGAGCTGATgtgagtaatg ... atctgtacagGGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGT
EST: AAAAACTTGGAGCTGAT GGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTEST: gi|14259175|gb|BG882083.1|BG882083
genomic: AAAAACTTGGAGCTGATgtgagtaatg ... atctgtacagGGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGT
EST: TTTCCACTCCTGCAGTATCTGCTGTTATACGTGAAAAACTTGGAGCTGAT GGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTEST: gi|21675862|gb|BQ628213.1|BQ628213
genomic: TTTCCACTCCTGCAGTATCTGCTGTTATACGTGAAAAACTTGGAGCTGATgtgagtaatg ... atctgtacagGGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGT
EST: TTTCCACTCCTGCAGTATCTGCTGTTATACGTGAAAAACTTGGAGCTGAT GGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTEST: gi|12773224|gb|BG238151.1|BG238151
genomic: TTTCCACTCCTGCAGTATCTGCTGTTATACGTGAAAAACTTGGAGCTGATgtgagtaatg ... atctgtacagGGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGT
EST: TTTCCACTCCTGCAGTATCTGCTGTTATACGTGAAAAACTTGGAGCTGAT GGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTEST: gi|33390415|gb|CA853610.1|CA853610
genomic: TTTCCACTCCTGCAGTATCTGCTGTTATACGTGAAAAACTTGGAGCTGATgtgagtaatg ... atctgtacagGGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGT
EST: GTTATACGTGAAAAACTTGGAGCTGAT GGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTEST: gi|254323080|gb|GR839993.1|GR839993
genomic: GTTATACGTGAAAAACTTGGAGCTGATgtgagtaatg ... atctgtacagGGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGT
EST: TTTCCACTCCTGCAGTATCTGCTGTTATACGTGAAAAACTTGGAGCTGAT GGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGT
genomic: TTTCCACTCCTGCAGTATCTGCTGTTATACGTGAAAAACTTGGAGCTGATgtgagtaatg ... atctgtacagGGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAGCAGCAAATGGAGTAAGACGTGTTTGGATTGGTCAAAATGGATTACTTTCCACTCCTGCAGTATCTGCTGTTATACGTGAAAAACTTGGAGCTGATgtgagtaatgttttctacagtttgcttctcgttgtttgaacttctctttattatgcttagaatgtgttttgtttcctcaaagatgatccatgattttcatagtggaattgcatatggtaacatttttttctcctgaattaaagattaatagtggataaaaaattgtattatctgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT