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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGATTACAAGAAGCCATATATAAGCTTCATGGATGGAATAACTATGGGTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGgtatgctcacctggcaatagttgtctcgtttagtcatgaattgccgttgtagatcctatttatgacttttctttttcattcacatttatag

Basic information

species Glycine max
transcript GLYMA08G04460.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04460.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G047564_T02 (Zea mays), 5'ss of exon 4
TTCTGATTACAAGAAGCCATATATAAGCTTCATGGATGGAATAACTATGGGTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGgtatgctcacctggcaatagttgtctcgtttagtcatgaattgccgttgtagatcctatttatgacttttctttttcattcacatttatag---
   ||| ||    || || |||||| |||| ||||||||| | || ||||| |||||||||||  |||| || ||||||||||| ||||| || ||||||| |   |    || |   | ||     ||||  |  | | ||     | || || || |  ||     |  |  ||  |  |   | || |   
ACATGAGTATGCAAAACCTTATATATGCTTGATGGATGGAGTGACAATGGGATTTGGAATTGGGCTATCAGGGCATGGCCGCTACCGCATTATTACAGAGgcaatttt--ttgtctccaatt--tatgtttgtttttaatttcattatataaattctttgaatactcatcttgcttggtgtatcatcattgcag

upper sequence: GLYMA08G04460.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g04290.t01 (Vitis vinifera), 5'ss of exon 6
TTCTGATTACAAGAAGCCATATATAAGCTTCATGGATGGAATAACTATGGGTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGgtatgctcacc-----tggcaatagttgtctcgtttagtcatgaattgccgttgtagatcctatttatgacttttctttttcattcacatttatag
|||||| ||||| || |||||||||||| |||||||||| || || |||||||||||||||||  | ||||||||||| ||||| || ||  | ||||||||||  |  ||     |||  |||  | | |  |  |  | | ||||    |  | | ||  |||| |||  ||| ||| |  |      ||  ||
TTCTGAGTACAAAAAACCATATATAAGCCTCATGGATGGCATTACAATGGGTTTTGGAATTGGACTGTCTGGTCATGGTCGCTACCGGATTGTCACAGAGgtataatggccatatatggacataaatttgttttgcaa-cttcaattagaataat-gttctaatttctgatatttatttgtactaatttgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207821410|gb|GD790587.1|GD790587
EST:     TTTGGAATTGGTTTATCTTGGTTCATGGCCGCTATCGCATCATAACAGAG                         AGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTA
genomic: TTTGGAATTGGTTTATCT-GGT-CATGGCCGCTATCGCATCATAACAGAGgtatgctcac ... acatttatagAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTA
EST: gi|209704856|gb|BW673467.1|BW673467
EST:     GTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAG                         AGAACTGTTCTTGCGATGCCAGAAAAT
genomic: GTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGgtatgctcac ... acatttatagAGAACTGTTCTTGCGATGCCAGAAAAT
EST: gi|298170101|gb|HO018725.1|HO018725
EST:     GTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAG                         AGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTA
genomic: GTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGgtatgctcac ... acatttatagAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTA
EST: gi|209726516|gb|BW658083.1|BW658083
EST:     GTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAG                         AGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTA
genomic: GTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGgtatgctcac ... acatttatagAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTA