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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGGAAGGAGAAATTAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGgtataaacctaatttattcaatggaattgaatatttacataaacttaatttatatccaaaattggaataaaaaactaaagtatatatatatatatatata...

Basic information

species Glycine max
transcript GLYMA08G04110.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04110.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 4
GTTAGGAAGGAGAAATTAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGgtataaacct-aatttattcaatggaattgaatatttacataaacttaattta-tatccaaaattggaataaaaaactaaagtatatatatatatatatata
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GTGAGGAAGGAAAAGTTAGGTGACAGAATTACAGCCCTTCACCAGCTAGTATCCCCATTTGGGAAGgtaaaactcttaatctatgcaattaaga-aagtacaaat-taagctagatctagcacataaaaatggaataatatgtgtgtagttctttatgaggaaaccca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204015|gb|BI426783.1|BI426783
EST:     TAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAG                         ACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTT
genomic: TAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGgtataaacct ... acttttgcagACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTT