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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCACGGGATTGATCATTTGGTGATTCCCACCAGGGATTATCTCTTTGCCCCCTCATTCGTGGATATTAACCGGGCTGTGCAGTTCATTCATCgtgggtgttttcttttcaatttaatttcgggaaagtggggaagggggttaaatgcatcagtcattgtggttctttgtaattttttggttgttggtggtgaaatatagtcgtgtgtgtatttcctttgtattatggcag

Basic information

species Glycine max
transcript GLYMA08G03600.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193582765|gb|FK537419.1|FK537419
EST:     CCGGGCTGTGCAGTTCATTCATC                         AGAATGCAACTTGCGGC-AAACTACTTATGTTCACTGTAAAGCTGGGCGGG
genomic: CCGGGCTGTGCAGTTCATTCATCgtgggtgttt ... attatggcagAGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGG
EST: gi|192295656|gb|FG990510.1|FG990510
EST:     GTTCATTCATC                         AGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGG
genomic: GTTCATTCATCgtgggtgttt ... attatggcagAGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGG
EST: gi|207832678|gb|GD803494.1|GD803494
EST:     AGTTCATTCATC                         AGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGC-GG
genomic: AGTTCATTCATCgtgggtgttt ... attatggcagAGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGG
EST: gi|207819140|gb|GD793274.1|GD793274
EST:     CCGGGCTGTGTCAGTTCATTTCATC                         AGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGG
genomic: CCGGGCTGTG-CAGTTCA-TTCATCgtgggtgttt ... attatggcagAGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGG
EST: gi|19453452|gb|BM954862.1|BM954862
EST:     CTTTGCCCCCTCATTCGTGGATATTAACCGGGCTGTGCAGTTCATTCATC                         AGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGG
genomic: CTTTGCCCCCTCATTCGTGGATATTAACCGGGCTGTGCAGTTCATTCATCgtgggtgttt ... attatggcagAGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGG
EST: gi|213598064|gb|DB972252.1|DB972252
EST:     CTTTGCCCCCTCATTCGTGGATATTAACCGGGCTGTGCAGTTCATTCATC                         AGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGG
genomic: CTTTGCCCCCTCATTCGTGGATATTAACCGGGCTGTGCAGTTCATTCATCgtgggtgttt ... attatggcagAGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGG
EST: gi|10254074|gb|BE821840.1|BE821840
EST:     GCAGTTCATTCATC                         AGAATGCAACTTGCNNCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGG
genomic: GCAGTTCATTCATCgtgggtgttt ... attatggcagAGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGG
EST: gi|193425492|gb|FK388639.1|FK388639
EST:     CTGTGCAGTCCATTCATC                         AGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGG
genomic: CTGTGCAGTTCATTCATCgtgggtgttt ... attatggcagAGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGG