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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCTTTACATGCTGCAAGGGGGCTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgttgtctgctatcttattctggaaaatagtttttgttgtcagctttttactagagactgagatttgtagcttcttcaaaacgagcttctgtttaaa...

Basic information

species Glycine max
transcript GLYMA08G03070.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03070.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g45280.1 (Oryza sativa), 5'ss of exon 4
GATTGCTTTACATGCTGCAAGGGGGCTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgt----tgtctgctatcttatt--ctggaaaatagtttttgttgtcagctttttactagagactgagatttgtagcttcttcaaaacgagc--ttctgtttaaa
||||||| ||  ||||||||||||||| |  | |||||| || || || ||  | ||||||||||| || ||||| || ||||| |||||| ||||||||||||||      ||| |||||| | |   | || |  | |     || |||     ||  || ||     || ||  | ||  |      | |||   | ||||    
GATTGCTCTAGGTGCTGCAAGGGGGCTGGAATATCTTCACGGAGCTGAGAGATCAATTATATATCGAGATTTCAAAACATCAAACATCTTGTTAGATGCGgtttgtacttcatctactatctgaatactttgatatcattaccctttttcaatcacttgttatag-----gaattccatctcatcaggctctagcaactttgttc---

upper sequence: GLYMA08G03070.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G050701_T02 (Zea mays), 5'ss of exon 4
GATTGCTTTACATGCTGCAAGGGGGCTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgttgtctgctatctta--ttctggaaaatagtttttgttgtcagctttttactagagactgagatttgtagcttcttcaaaacgagcttctgtttaaa-
|||||| ||   |||||||||||||||||  |  |||||  | || || ||  | || || ||||| || |||||||| ||||| ||||||||||||||||||||| || |  ||| |||  || |      | | |  | |||     |||  |||| | ||| |      |   |||    || |  | | |   |  |  
GATTGCATTGGGTGCTGCAAGGGGGCTCGAGTACCTTCACAGAGCTGAGAGATCCATCATTTATCGAGATTTCAAGACATCAAACATCTTGCTAGATGCGgtttgt-gtttcatatgttaatttttaatgtgttgataatattgctgtatttcaactacacacttaagaccttg--ttcggttaatcccgttacacatggatt

upper sequence: GLYMA08G03070.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G157115_T01 (Zea mays), 5'ss of exon 4
GATTGCTTTACATGCTGCAAGGGGGCTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgttgtctgctatcttattctggaaaatagtttttgttgtcagctttttactagagactgagatttgtagcttcttcaaaacgagcttctgtttaaa---
|||||| ||   |||||||||||||||||  |  ||||| || || || ||  | || || ||||| || |||||||| ||||| |||||||||||||||||| ||  |    |   | ||| |  | |||   | ||| |   |    |  | |   |    |  |      | | || ||     | |||||| ||||   
GATTGCATTGGGTGCTGCAAGGGGGCTCGAGTACCTTCACGGAGCTGAGAGATCCATCATTTATCGAGATTTCAAGACATCAAACATCTTGCTAGATGCGgttcgtgtttcatttattaatttttaataatg--tgttgatagtattgctgcatttatgctgtatttcaaccacatgtttaaggtt-gtttctgtataaaact

upper sequence: GLYMA08G03070.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0065g00470.t01 (Vitis vinifera), 5'ss of exon 4
GATTGCTTTACATGCTGCAAGGGGGCTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgttgtctgctatcttattctggaaaatagtttttgttgtcagctttttactagagactgagatttgtagcttcttcaaaacgagcttctgtttaaa----
|||||||||| |||| ||||  || || |||||||||||||||||||||||| |||| ||||| || || |||||||| |||||||||||||||||||||||| ||  || | |   || |  |||     | |    ||| | |      |    |||    ||||    |||   |    || ||||||    |        
GATTGCTTTAGATGCAGCAAAAGGTCTTGCTTTTCTTCATGGTGCAGAAAGGTCTATCATATACCGAGATTTCAAGACATCAAATATCTTGCTAGATGCGgttagtcatcagtt-ctttgtcatggttttaaataagagttctaaagcacatt---gagtggaagataaaaagcacatatggaatgagcttaaaatattgtgga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208170854|gb|GD969249.1|GD969249
EST:     GGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCG                         GATTTCAATGCGAGGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATG
genomic: GGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgttgtc ... aaacctgcagGATTTCAATGCGAAGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATG
EST: gi|192326778|gb|FK018905.1|FK018905
EST:     GGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCG                         GATTTCAATGCGAAGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATG
genomic: GGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgttgtc ... aaacctgcagGATTTCAATGCGAAGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATG
EST: gi|298188842|gb|HO035535.1|HO035535
EST:     GGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCG                         GATTTCAATGCGAAGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATG
genomic: GGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgttgtc ... aaacctgcagGATTTCAATGCGAAGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATG