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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGTTCTCAACGGCAATTAGTGCATCATGTGTTTCCAAAGCTTGCAGTGTATAATTCCGTGGACCCTTCATTGGCTCCCTCTCTTCTCATGgtatgctccaactcatttgaacttgaatgcttgcttataagttgtttctgatcttcccttatctactatgtcccaattcccttgaacttgaatgctttct...

Basic information

species Glycine max
transcript GLYMA08G03020.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03020.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G012319_T01 (Zea mays), 5'ss of exon 3
AAAAGTTCTCAACGGCAATTAGTGCATCATGTGTTTCCAAAGCTTGCAGTGTATAATTCCGTGGACCCTTCATTGGCTCCCTCTCTTCTCATGgtatgctccaactcatttgaacttgaatgcttgcttataagttgtttctgatcttcccttatctactatgtcccaattcccttgaacttgaatgctttct---
|||||||| ||  ||||  | ||  ||  |||||| || |||||||| ||||| ||||| ||||| |||||  ||||||| ||||||||||||||| |||     || | ||  |||    |  ||||| ||  |  ||| ||    |      |  |  |    |  || | |   | |  | | | |||     
AAAAGTTCCCAGAGGCAGCTCGTAAATAGTGTGTTCCCCAAGCTTGCTGTGTACAATTCTGTGGATCCTTCGGTGGCTCCATCTCTTCTCATGgtaagcttt---tcctgtgcccttcctcgactgcttctagctattttgtggaggtaggacttagatcagtcacagatacacaccagcaagcaaggttttaaag

upper sequence: GLYMA08G03020.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 5
AAAAGTTCTCAACGGCAATTAGTGCATCATGTGTTTCCAAAGCTTGCAGTGTATAATTCCGTGGACCCTTCATTGGCTCCCTCTCTTCTCATGgtatgctccaactcatttgaacttgaatgcttgcttataagttgtttctg--atcttcccttatctactatgtcccaattcccttgaacttgaatgctttct
|||||||| ||   |||  |||||||||||||||||||||| ||||| || || || || || |||||||||||||| || |||||||||||||||   |   |||  |       |     | |  || | | || |||  |  || |      | ||  | |       |  | || ||   | ||  | |  
AAAAGTTCCCAGAAGCAGCTAGTGCATCATGTGTTTCCAAAACTTGCCGTTTACAACTCGGTTGACCCTTCATTGGCACCTTCTCTTCTCATGgtacaatgttact--tcctgttgtactctcctagttctgattttttttggcaatatgatggaaccttttgtcagtagttggctttcaaagagtataatgtaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213591509|gb|DB959939.1|DB959939
EST:     TTGCAGTGTATAATTCCGTGGACCCTTCATTGGCTCCCTCTCTTCTCATG                         CTTAATCAACAGTGTGAAGATAGAAGTGTTCTCCGATACGTCT
genomic: TTGCAGTGTATAATTCCGTGGACCCTTCATTGGCTCCCTCTCTTCTCATGgtatgctcca ... tgttctgtagCTTAATCAACAGTGTGAAGATAGAAGTGTTCTCCGATACGTCT