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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTGGAACTTACCATGATTGGTGTGAAGCTTTCTCAACTTATCCAAGAACATATGATCTCATCCATGCTAGTAATGTATTTGGCATATATCAGGATAGgtaggcaaacttatatatggacattatctctacctctctagcttatgttattaattgtgtcttaagtattctatagtgttgaaatggattaattgttgtgtgtgaaag

Basic information

species Glycine max
transcript GLYMA08G03000.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03000.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g01450.1 (Oryza sativa), 5'ss of exon 5
TTATTGGAACTTACCATGATTGGTGTGAAGCTTTCTCAACTTATCCAAGAACATATGATCTCATCCATGCTAGTAATGTATTTGGCATATATCAGGATAGgtaggcaaacttatatatggacattatctctacctctctagcttatgttattaattgtgtcttaagtattc-tatagtgttgaaatggattaattgttgtgtgtgaaag
| |||||||| ||||| || |||||||| ||||||||||| ||||| || ||||||||  |||||||||||  |||  ||||  || | |||||||| |||||    ||    | | |||    | | || |  |    |    | | | | ||  ||  |||   | | | | ||| ||| ||||| ||    | |   ||       
TCATTGGAACCTACCAAGACTGGTGTGAGGCTTTCTCAACGTATCCGAGGACATATGACTTCATCCATGCTGATAAAATATTCAGCTTTTATCAGGACAGgtaatgcaagaactgtgtgg----tgtgtccagtttatca----aggctttaaaccgtcccttttttttccctgtagagttcaaatgtatcgtgtttctggttcattt-

upper sequence: GLYMA08G03000.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G164916_T02 (Zea mays), 5'ss of exon 6
TTATTGGAACTTACCATGATTGGTGTGAAGCTTTCTCAACTTATCCAAGAACATATGATCTCATCCATGCTAGTAATGTATTTGGCATATATCAGGATAGgtaggcaa---------------acttatatatggacattatctctacc--tctctagcttatgttattaattgtgtcttaagtattctatagtgttgaaatggattaattgttgtgtgtgaaag----------------------------------------------
||||||| || ||||||||||||||||| ||||||||||| || || || || || || ||||||||||||  ||| || ||  |||  || ||||| |||||   ||               | |    | | || ||| ||| ||||  || |||  |  | |  ||  |||| |  |   |    | |   |  |   |   ||  |      || | |||                                               
TTATTGGCACGTACCATGATTGGTGTGAGGCTTTCTCAACGTACCCGAGGACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAGgtaaagaatgcctttgctgtttaattctgctctagaaattttctttaccgttcactaagtcgtatggttttttgtatgatgtcttccttttgtgggcggccttatttggtaacaaggttttaaaatgcccacagcttaagcaagtagatactaactatggagtggtcgcag

upper sequence: GLYMA08G03000.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G114570_T01 (Zea mays), 5'ss of exon 5
TTATTGGAACTTACCATGATTGGTGTGAAGCTTTCTCAACTTATCCAAGAACATATGATCTCATCCATGCTAGTAATGTATTTGGCATATATCAGGATAGgtaggcaaact-tatatatgga-cattatctc---tacctctctagcttatgttattaattgtgtcttaagtattctatagtgttgaaatggattaattgttgtgtgtgaaag
| || || || ||||| || ||||| ||||||||||| || ||||||||||||||||| ||| | ||||||   ||| | ||| |||| || || || ||||| |  |||| | |   | || | ||||||    |||  || ||    | |  | |  || |     |   |  | ||  ||  |   |   |||     |     |   ||
TCATCGGCACGTACCAGGACTGGTGCGAAGCTTTCTCGACGTATCCAAGAACATATGACCTCCTGCATGCTGACAATCTGTTTAGCATCTACCAAGACAGgtaagggaactatgtgcttcgatctttatcttaaatactactatatggcaagcaaatttttttacaacatacaggccatcatgacgcgttttgttatcccctaaactttccag

upper sequence: GLYMA08G03000.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G10440.1 (Arabidopsis thaliana), 5'ss of exon 4
TTATTGGAACTTACCATGATTGGTGTGAAGCTTTCTCAACTTATCCAAGAACATATGATCTCATCCATGCTAGTAATGTATTTGGCATATATCAGGATAGgtaggcaaacttatatatggacattatctctacctctctagcttatg--ttattaattgtgtcttaagtattctatagtgttgaaatggattaattgttgtgtgtgaaag
| || || || || || |||||||||||||  |||||||| ||||||||||| |||||| | || |||||  |     | ||  || ||||  |  |||||||      | |     |  |  | |   |||  ||  |       |  | ||  | |||   ||  ||||  | ||                                 
TGATAGGGACGTATCAAGATTGGTGTGAAGGATTCTCAACGTATCCAAGAACTTATGATATGATTCATGCAGGAGGATTGTTCAGCTTATACGAACATAGgtaaagtttcatggtcttccaactcaaaactatatccgtgaaacgcgactaatggaatgttctttgtgtatgttttaag-------------------------------

upper sequence: GLYMA08G03000.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g03200.t01 (Vitis vinifera), 5'ss of exon 4
TTATTGGAACTTACCATGATTGGTGTGAAGCTTTCTCAACTTATCCAAGAACATATGATCTCATCCATGCTAGTAATGTATTTGGCATATATCAGGATAGgtaggcaaacttatatatggacattatctctacctctctagcttatgttattaattgtgtc-ttaagtattctatagtgttgaaatggattaattgttgtgtgtgaaag
| ||||| || || ||||| |||||||| || ||||| || |||||||||||||||||||| |||||||| || ||||| ||  ||||||||||||| |||||   ||||||       |||| |   |  |  | |   | |    |||  |||  |||  |||| | |    |  | |    ||| |                    
TCATTGGGACATATCATGACTGGTGTGAGGCCTTCTCGACATATCCAAGAACATATGATCTGATCCATGCAAGCAATGTGTTCAGCATATATCAGGACAGgta---aaacttg-----agacactcagtgcaattttgatgttctgcttaacaatcttgtggttaaatgtgtgttcatatgtgcatgaag-------------------