1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGTGATGCTCATCACATGACTGATCCAAGAGCTGATGGTCTTGGAGTTTCATCTTGCATAAGCAAGAGTTTAGAAGATGCTGGAGTTTCTCCTGAAGAGgtaagaaatagagagtactaccaaggcacaagtatccaaactgaactgatcaatacataattacacataattagaatgttgctttgaaaaagtttagattctatattcaattgtttatgtaaaattgatgatttcttattggtttaatttctaaactgtacag
species | Glycine max |
transcript | GLYMA08G02850.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATCTTGCATAAGCAACAGTTTACAAAATGCTGGAGTTTCTCCTGAAGAG GTGAACTATGTGAATGCTCATGCCCCGTCEST: gi|6718887|gb|AW306534.1|AW306534
genomic: CATCTTGCATAAGCAAGAGTTTAGAAGATGCTGGAGTTTCTCCTGAAGAGgtaagaaata ... aactgtacagGTGAACTATGTGAATGCTCATGCCACGTC
EST: CATCTTGCATAAGCAAGAGTTTAGAAGATGCTGGAGTTTCTCCTGAAGAG GTGAACTATGTGAATGCTCATGCCACGTCAACACTGGCTGGTGACTTGGCTEST: gi|58018638|gb|CX705380.1|CX705380
genomic: CATCTTGCATAAGCAAGAGTTTAGAAGATGCTGGAGTTTCTCCTGAAGAGgtaagaaata ... aactgtacagGTGAACTATGTGAATGCTCATGCCACGTCAACACTGGCTGGTGACTTGGCT
EST: CATCTTGCATAAGCAAGAGTTTAGAAGATGCTGGAGTTTCTCCTGAAGAG GTGAACTATGTGAATGCTCATGCCACGTCAACACTGGCTGGTGACTTGGCT
genomic: CATCTTGCATAAGCAAGAGTTTAGAAGATGCTGGAGTTTCTCCTGAAGAGgtaagaaata ... aactgtacagGTGAACTATGTGAATGCTCATGCCACGTCAACACTGGCTGGTGACTTGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGATGCTCATCACATGACTGATCCAAGAGCTGATGGTCTTGGAGTTTCATCTTGCATAAGCAAGAGTTTAGAAGATGCTGGAGTTTCTCCTGAAGAGgtaagaaatagagagtactaccaaggcacaagtatccaaactgaactgatcaatacataattacacataattagaatgttgctttgaaaaagtttagattctatattcaattgtttatgtaaaattgatgatttcttattggtttaatttctaaactgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA