Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTCAGGCCAATCCTTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatttttatcttcttgattgaatattggtcccatttgaaagaagataacatagttcatgttatttttttttctggtccactaaactctgtccctttttttggtttatag

Basic information

species Glycine max
transcript GLYMA08G02840.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02840.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 4
AACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTCAGGCCAATCCTTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgta--ttttatttttatcttcttgattga---atattggtcccatttgaaagaagataacatagttcatgttatttttttttctggtccactaaactctgtccctttttttggtttatag
 || |||||||  ||||| ||| |||| |||||||| ||||||||  |||| || |||||||| || ||||||||||| || |||||||||||||| ||||||  | | | ||  |     |  ||  |   |    | || ||||      | |  | |  | |      | |||| || ||||     |  |                          
CACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTCAGGCCGGTCCTCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGgtaaatctcaattcaacaagatcaatcaatctagggagatctcattaagggaacggcatcggattctgatgtgttttgttatctgaatttcacag-------------------------

upper sequence: GLYMA08G02840.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S168_104V6.2 (Physcomitrella patens), 5'ss of exon 5
AACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTCAGGCCAATCCTTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatttttatcttcttgattgaatattggtcccatttgaa--agaagataacatagttcatgttatttttttttctggtccactaaactctgtccctttttttggtttatag
 | | | ||    ||| | ||  | || ||||| || ||||||||| | || || ||||||||||| ||||||||||||||| ||||   ||| || |||||||  |||||   ||||    |   |   |  |   | ||       | |  |     |     |  |  ||   ||     |  |  | | || ||  |                
TATTCGAAAGCAGTGTAAGCCTTTAGAAGAGGACTCATTCAGGCCAGTGCTGCATCACTATGATGGGCCCAAGTTCCGTCTTCAGCTCTCTGTTCCAGAGgtatcatatttaactcttaaacac-aaccgtccgcttcgttcagctcggtatcttgtgcaaagagtaatgattgagttgaaaatttatgatagtcagtatc----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023594|gb|CX710335.1|CX710335
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|207831967|gb|GD803855.1|GD803855
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|207797287|gb|GD768985.1|GD768985
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|16347749|gb|BI973344.1|BI973344
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAA
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAA
EST: gi|192321583|gb|FK012919.1|FK012919
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|298177553|gb|HO027220.1|HO027220
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|254342776|gb|GR858938.1|GR858938
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|193424711|gb|FK392030.1|FK392030
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|21600830|gb|BQ611161.1|BQ611161
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|22927024|gb|BU544163.1|BU544163
EST:     TTCACCACTATGATNNTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|208269179|gb|GE068662.1|GE068662
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|192321582|gb|FK012918.1|FK012918
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|207700074|gb|GD682089.1|GD682089
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|207681551|gb|GD662858.1|GD662858
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|207822963|gb|GD796956.1|GD796956
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTTGCAGAACAAGACACCTTCAGTGACAC
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTT-GCAGAACAAGACACCTTCAGTGACAC
EST: gi|208106037|gb|GD904250.1|GD904250
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|208113464|gb|GD911593.1|GD911593
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|151413104|gb|EV282912.1|EV282912
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|298172286|gb|HO021878.1|HO021878
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|192323930|gb|FK018651.1|FK018651
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|17401751|gb|BM178533.1|BM178533
EST:     CACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTTCAGTGACAC
genomic: CACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACC-TTCAGTGACAC
EST: gi|208036103|gb|GD833052.1|GD833052
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|151406616|gb|EV276431.1|EV276431
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|254321792|gb|GR825109.1|GR825109
EST:     GTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: GTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|208154999|gb|GD954932.1|GD954932
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|193508309|gb|FK466152.1|FK466152
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|208249696|gb|GE048651.1|GE048651
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|208070070|gb|GD868843.1|GD868843
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|208197525|gb|GD995442.1|GD995442
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|120496114|gb|EH224281.1|EH224281
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|298171052|gb|HO016084.1|HO016084
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|208278697|gb|GE078728.1|GE078728
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCCGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|6455600|gb|AW186283.1|AW186283
EST:     TTCACCACTATGATGGTCCCAAGTTTCGGCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|208221910|gb|GE019886.1|GE019886
EST:     CACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: CACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|193366186|gb|FK330201.1|FK330201
EST:     TTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|16995947|gb|BM085319.1|BM085319
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|193487340|gb|FK450949.1|FK450949
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|208133050|gb|GD928701.1|GD928701
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|208135101|gb|GD928820.1|GD928820
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|58019956|gb|CX706698.1|CX706698
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|23726186|gb|BU761077.1|BU761077
EST:     TTCACCACTATGATGGTCCCAAGCTCCCTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTT
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTT
EST: gi|18721661|gb|BM523349.1|BM523349
EST:     CAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: CAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: gi|151394694|gb|EV264565.1|EV264565
EST:     TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG                         GCGTTGTCTCTGCTGGATATCTTTGCAG
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTCAGGCCAATCCTTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatttttatcttcttgattgaatattggtcccatttgaaagaagataacatagttcatgttatttttttttctggtccactaaactctgtccctttttttggtttatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA