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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATCACGGTTGCCCAAAAGTATTACAGATCCATCAGTGGTTACAATgtaagtttttgttgtttaattatgtttatttcacccctttctgttaaaattgagcaaatacaaaactttcccatttggaaaaatgaattaatgtgcatacggcatgcctaaattaaaattaaaaaaatcaattgcaaatgaaaggaaacaaaagtaacaattaattgagggttggtaattgaacgtgcag

Basic information

species Glycine max
transcript GLYMA08G02610.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02610.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G11050.1 (Arabidopsis thaliana), 5'ss of exon 4
CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATCACGGTTGCCCAAAAGTATTACAGATCCATCAGTGGTTACAATgtaagtttttgttgtttaattatgtttatttcacccctttctgttaaaattgagcaaatacaaaactttccca-tttggaaaaatgaattaatgtgcatacggcatgcctaaattaaaattaaaaaaatcaattgcaaatgaaaggaaacaaaagtaacaattaattgagggttggtaattgaacgtgcag
|||||||| ||||| |||||||||||||||||||||||||||||||| || || || ||||| |||||| ||||| |||| ||||||||||||  |         |   ||| ||   |  |       | ||||   |   |    |||    |||  | || ||| | | ||  |                                                                                                        
CTATTTGAATTTGCGGACAAATACAGAGGCAAATATGACAGCAGCATTACCGTGGCACAAAAATATTACCGATCCGTCAGCGGTTACAATgtacttaacgcaaactctcttaagtaactaacgaaaacatttgttgctagcta-ttgatattttactagcgcaattttgtataaccag-------------------------------------------------------------------------------------------------------

upper sequence: GLYMA08G02610.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G64390.1 (Arabidopsis thaliana), 5'ss of exon 4
CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATCACGGTTGCCCAAAAGTATTACAGATCCATCAGTGGTTACAATgtaagtttttgttgtttaattatgtttatttcacccctttctgttaaaattgagcaaat-acaaaactttcccatttggaaaaatgaattaatgtgcatacggcatgcctaaattaaaattaaaaaaatcaattgcaaatgaaaggaaacaaaagtaacaattaattgagggttggtaattgaacgtgcag
 | |||||||| || |||||||||||||| ||||| |||||||| ||||| |||||||| || || ||| ||||| |||| |||||||||||||| |      | ||  || |    || | |          |||||||| ||    | |  ||   |||| || |   ||| ||   | |  | || | |    |                                                                                    
TTGTTTGATTTCGCCGACAAATACAGAGGAAAATACGACAGCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGCGGTTACAATgtaagatcccacaggtt--ttgta---atctga--------gattaaaattaagtgctttatcaattgttccgatgtctgaaactgttcttaatttca-atgatcag------------------------------------------------------------------------------------

upper sequence: GLYMA08G02610.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 6
CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATCACGGTTGCCCAAAAGTATTACAGATCCATCAGTGGTTACAATgtaagtttttgttgtttaattatgtttatttcacccctttctgttaaaattgagcaaatacaaaactttcccatttggaaaaatgaattaatgtgcatacggcatgccta-aattaaaattaaaaaaatcaattgcaaatgaaaggaaacaaaagtaacaattaattgagggttggtaattgaacgtgcag
|| || || ||||  ||||||||||| ||||||||||||||||||||||| || ||||| ||||| ||| | ||   |||||| |||  |||| ||  |  | | |        |||     |    || |   |   |  | |||         ||    ||       || ||||||||      || | ||||     |||| |  ||   |                                                                  
CTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCTgtacgtgatcatagctc------ttttgaactagtgattccatgtgggacagtgcacggtttggtctggtgcaccactttaactgaattaac---tgtatgacatgttggtaattgatgtttgtag-----------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723572|gb|BW682716.1|BW682716
EST:     GCAGCATCACGGTTGCCCAAAAGTATTACAGATCCATCAGTGGTTACAAT                         GATGAATTGCTCTGGGCTGCTGCTTGGTTGTATCAAGCATCTAACAACCAG
genomic: GCAGCATCACGGTTGCCCAAAAGTATTACAGATCCATCAGTGGTTACAATgtaagttttt ... gaacgtgcagGATGAATTGCTCTGGGCTGCTGCTTGGTTGTATCAAGCATCTAACAACCAG
EST: gi|21888585|gb|BQ741798.1|BQ741798
EST:     GCAGCATCACGGTTGCCCAAAAGTATTACAGATCCATCAGTGGTTACAAT                         GATGAATTGCTCTGGGCTGCTGCTTGGTTGTATCAAGCATCTAACAACCAG
genomic: GCAGCATCACGGTTGCCCAAAAGTATTACAGATCCATCAGTGGTTACAATgtaagttttt ... gaacgtgcagGATGAATTGCTCTGGGCTGCTGCTTGGTTGTATCAAGCATCTAACAACCAG