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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTGAGAAAGCAAATGTTGATCCCCCAGAGATCATTGTTGACAACCAAGTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttcatgttgtaattatatcttaactaactgtttggccttgctttcttaccttattctttaccttttttttttcttgattaattataatttaaaa...

Basic information

species Glycine max
transcript GLYMA08G02390.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02390.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 4
ATGCTGAGAAAGCAAATGTTGATCCCCCAGAGATCATTGTTGACAACCAAGTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttcatgttgtaattatatcttaactaactgtttggccttgctttcttaccttattctttaccttttttttttcttgattaattataatttaaaa-
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ATGCAGGAAAAGCAAATGTTTATCCACCTGAAATAATAGTTGACCATCAAGTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaat-tttatttaaagagaatttccaaaactgctggctttatttgcattcattatgtatccatgagttattgcattcaataatccaacataatttaacca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120493334|gb|EH221501.1|EH221501
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|18848551|gb|BM567727.1|BM567727
EST:     TCTATCTTCCCAC-TGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGGTGGGGTGGTTGTTGGGCTTCTCGTGATGG
genomic: TCTATCTTCC-ACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGG-TGGGGTGGT-GTTGG-CTTCTCGTGATGG
EST: gi|23729135|gb|BU762653.1|BU762653
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|6341379|gb|AW164203.1|AW164203
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGG
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGG
EST: gi|213595223|gb|DB962362.1|DB962362
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTC
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTC
EST: gi|254344832|gb|GR855596.1|GR855596
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|151393563|gb|EV263438.1|EV263438
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|26048381|gb|CA784877.1|CA784877
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|26047921|gb|CA784561.1|CA784561
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|19935254|gb|BQ080284.1|BQ080284
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGT
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGT
EST: gi|207811307|gb|GD784740.1|GD784740
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|192327864|gb|FK022437.1|FK022437
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|192331491|gb|FK022738.1|FK022738
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTNNNNNNNNTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGG-TGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
EST: gi|192317054|gb|FK007835.1|FK007835
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGG-TGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
EST: gi|193636190|gb|FK583051.1|FK583051
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGNTTGTGTGT
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGT
EST: gi|13563524|gb|BG551744.1|BG551744
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         -TCTGG-GGGTTGGNGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|192316066|gb|FK008891.1|FK008891
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA-
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|13563500|gb|BG551720.1|BG551720
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGGTGGGTGTTGGCTTTCTCGTGATGGAAAGATT
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGG-TGG-TGTTGGCTT-CTCGTGATGGAAAGATT
EST: gi|151396120|gb|EV265997.1|EV265997
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|8827772|gb|BE211502.1|BE211502
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGANNGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|23728894|gb|BU762516.1|BU762516
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGCGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|192304325|gb|FG996451.1|FG996451
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGG-TGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
EST: gi|27425810|gb|CA937330.1|CA937330
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|7234524|gb|AW569861.1|AW569861
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|208182206|gb|GD980653.1|GD980653
EST:     GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACTCACTCATCAAAATTCTCATGATCTCTACTGgtaatgttca ... tgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA