Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCGTGATGGATACCGTGGAGGTCCCCGAGGAGGACCTGGTGGTGACTTTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcattgtcactgcacttcctctgctgttgtttactgtaatcagattgctatttctttgtggcctagtttgagttattgttgtttgctggctttc...

Basic information

species Glycine max
transcript GLYMA08G02070.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6725965|gb|AW310364.1|AW310364
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|193376907|gb|FK340542.1|FK340542
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTC-TTT-GG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|193542754|gb|FK503221.1|FK503221
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|7235071|gb|AW570462.1|AW570462
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|209708679|gb|BW678856.1|BW678856
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|208303803|gb|GE105272.1|GE105272
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|298186242|gb|HO036875.1|HO036875
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAG
EST: gi|208296628|gb|GE090162.1|GE090162
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|209704548|gb|BW673373.1|BW673373
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|151409707|gb|EV279515.1|EV279515
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|37995153|gb|CF806742.1|CF806742
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|298170463|gb|HO019087.1|HO019087
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGA
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGA
EST: gi|193492643|gb|FK455753.1|FK455753
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|209700931|gb|BW661310.1|BW661310
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|193350351|gb|FK316221.1|FK316221
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTC-TTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGCTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|7028196|gb|AW457979.1|AW457979
EST:     GGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: GGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|214004630|gb|DB985603.1|DB985603
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|193677263|gb|FK615277.1|FK615277
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|208150921|gb|GD948586.1|GD948586
EST:     GGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: GGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|6725976|gb|AW310375.1|AW310375
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|192319208|gb|FK009120.1|FK009120
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|209708670|gb|BW678847.1|BW678847
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGT
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGT
EST: gi|208276550|gb|GE079086.1|GE079086
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|207824466|gb|GD794204.1|GD794204
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|298184743|gb|HO029956.1|HO029956
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGA
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGA
EST: gi|213593071|gb|DB969869.1|DB969869
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGT
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGT
EST: gi|38191054|gb|CF920260.1|CF920260
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGATTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|151411093|gb|EV280904.1|EV280904
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|21600525|gb|BQ610856.1|BQ610856
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|254334024|gb|GR848942.1|GR848942
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|193554462|gb|FK511379.1|FK511379
EST:     GGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: GGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|193323633|gb|FK290485.1|FK290485
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|31470619|gb|CD412647.1|CD412647
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|207806798|gb|GD778379.1|GD778379
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGGCTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGTTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|193419898|gb|FK381966.1|FK381966
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTAGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGC
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGT-GGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGC
EST: gi|192319209|gb|FK009121.1|FK009121
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|213587018|gb|DB961755.1|DB961755
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGT
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGT
EST: gi|209700932|gb|BW661311.1|BW661311
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|192319515|gb|FK009497.1|FK009497
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|21257147|gb|BQ454035.1|BQ454035
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGNG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|37995998|gb|CF807587.1|CF807587
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|214006318|gb|DB989545.1|DB989545
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|213611148|gb|DB972708.1|DB972708
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTC
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTC
EST: gi|213590720|gb|DB979607.1|DB979607
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|21888611|gb|BQ741824.1|BQ741824
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|298173386|gb|HO016722.1|HO016722
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGA
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGA
EST: gi|192311617|gb|FK004858.1|FK004858
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|208070540|gb|GD867521.1|GD867521
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|19269315|gb|BM885571.1|BM885571
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|151407984|gb|EV277799.1|EV277799
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|9986827|gb|BE660935.1|BE660935
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTTTTTTGGG                         GGTGCTGGTGGAANGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|208299661|gb|GE097158.1|GE097158
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|192311616|gb|FK004857.1|FK004857
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|151408864|gb|EV278672.1|EV278672
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|151400350|gb|EV270164.1|EV270164
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|209708671|gb|BW678848.1|BW678848
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|213605571|gb|DB970700.1|DB970700
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|193614080|gb|FK562752.1|FK562752
EST:     GAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTC-TTT-GG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: GAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|192319514|gb|FK009496.1|FK009496
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|20075385|gb|BQ094168.1|BQ094168
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTT
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTT
EST: gi|214006851|gb|DB987691.1|DB987691
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|208084418|gb|GD880574.1|GD880574
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTTGGAGC
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTT-GGAGC
EST: gi|12773925|gb|BG238852.1|BG238852
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTCGCTTTGGTCGTGGATCTTGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|207795630|gb|GD766879.1|GD766879
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|208169064|gb|GD971421.1|GD971421
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|193379662|gb|FK344044.1|FK344044
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|151412516|gb|EV282328.1|EV282328
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|214007367|gb|DB986247.1|DB986247
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|4396461|gb|AI495458.1|AI495458
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|254334023|gb|GR848941.1|GR848941
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|7590064|gb|AW705825.1|AW705825
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|298167153|gb|HO010592.1|HO010592
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACCACAGGCCCTCTTTTGGG                         GGTGCTGGTGGAAGGCCTGGCTTTGGTCGTG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcat ... catattgcagGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATCGTGATGGATACCGTGGAGGTCCCCGAGGAGGACCTGGTGGTGACTTTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatctcattgtcactgcacttcctctgctgttgtttactgtaatcagattgctatttctttgtggcctagtttgagttattgttgtttgctggctttc

- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctc