Sequence
atgc intronic sequence ATGC exonic sequenceTGATGTTTGGTCTGTTGGGTGCATACTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGCAAAGACTATGTTCACCAACTAAGGCTTATAACGGAGgtatggttttggtgcttccaattttggttatgctctgctgaagcatgtaaagttcttaactaacagtttaacaggcatgcagcactgtcagtgtgtaaaa...
Basic information
species | Glycine max |
transcript | GLYMA08G02060.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G02060.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g38950.1 (Oryza sativa), 5'ss of exon 4
TGATGTTTGGTCTGTTGGGTGCATACTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGCAAAGACTATGTTCACCAACTAAGGCTTATAACGGAGgtatggttttggtgcttccaattttggttatgctc--tgctgaagcatgtaaagttcttaactaacagtttaacaggc-atgcagcactgtcagtgtgtaaaa
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TGATGTCTGGTCAGTTGGATGCATACTTGGTGAAATTGTGACTCGTCAACCCCTGTTTCCTGGAAGGGATTACATTCAGCAACTAAAATTGATCACTGAGgtaaggcttgtctggttcattgcttgcatacttttaatgtctgcataaacgtaattttttatttgtacttgaataagagatacattacttgaactctgaa---
upper sequence: GLYMA08G02060.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G123886_T01 (Zea mays), 5'ss of exon 4
TGATGTTTGGTCTGTTGGGTGCATACTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGCAAAGACTATGTTCACCAACTAAGGCTTATAACGGAGgtatg-gttttggtgcttccaattttggttatgctctgctgaagcatgtaaagttcttaactaacagtttaacaggcatgcag----cactgtcagtgtgtaaaa--------------------------------------------------------
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CGACATGTGGTCCGTGGGCTGCATCTTCGGCGAGATGGTCACCAGAGAGCCCCTGTTTCCTGGCAAGGATTATGTCCACCAGCTGAGGCTGATAACCGAGgtatatatatatatatatatatagttggtgaagaga-gttgcattg-gttttttctcaagctagctagctaacacatatgaagagagtcttgtttgttctttaattaattacttacaacttcttcctcttccttctttatatatgttgatctaaataaaag
upper sequence: GLYMA08G02060.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g00270.t01 (Vitis vinifera), 5'ss of exon 4
TGATGTTTGGTCTGTTGGGTGCATACTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGCAAAGACTATGTTCACCAACTAAGGCTTATAACGGAGgtatggtt-ttggtgcttcc--aattttggttatgctctgctgaagcatgtaaagttcttaactaacagtttaacaggcatgcagcactgtcagtgtg---taaaa------------------------------
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TGATATATGGTCTGTTGGTTGCATACTAGGTGAAATCATGACCAGAGAACCATTATTCCCTGGCAAAGATTATGTTCATCAGCTGAGGCTTATCACAGAGgtatggttcttggtgcttttggagtgatgtttacttttggctgcagcattcttgtttccagttttccatgataaatcctacaaaat-cagccaatctggctcagaactaccacaatttttttctttggtgtgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9898807|gb|BE607775.1|BE607775EST: CCTTGTTTCCTGGCAAAGACTATGTTCACCAACTAAGGCTTATAACGGAG TTATTAGGTTCACCTGATGATGCAAGCCTTGAATTTCTCCGAAGTGATAAT
genomic: CCTTGTTTCCTGGCAAAGACTATGTTCACCAACTAAGGCTTATAACGGAGgtatggtttt ... ggcacaaaagTTATTAGGTTCACCTGATGATGCAAGCCTTGAATTTCTCCGAAGTGATAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATGTTTGGTCTGTTGGGTGCATACTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGCAAAGACTATGTTCACCAACTAAGGCTTATAACGGAGgtatggttttggtgcttccaattttggttatgctctgctgaagcatgtaaagttcttaactaacagtttaacaggcatgcagcactgtcagtgtgtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG