Sequence
atgc intronic sequence ATGC exonic sequenceCCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTAAATGGTGATGCTGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAGgtagtaatccttgttaagtttcttcagtataaaactagaatgcttcttacatgctctggcaatccatgctaatagtaagaagctttcttcattattgttg...
Basic information
species | Glycine max |
transcript | GLYMA08G01940.4 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G01940.3 (Glycine max), 5'ss of exon 5
lower sequence: AT5G41340.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTAAATGGTGATGCTGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAGgtagtaatccttgttaagtttcttcagtataaaactagaatgcttcttacatgctctggcaatc-catgctaatagtaagaagctttcttcattattgttg--
||||| ||||||||||| || || ||||||||||||| ||||| || |||||||| || ||||| || |||| | || | ||||| ||| |||| ||||||| | || | | || | | | | || | | |||| ||| |||| | | | | || | | || ||| || | |
CCTCAGCTTCTTCTGTATCCAAACCCATCAGATCCATTGAATGGAGAAGCTGCTGCGTTAATGATGCGTGATCGTCCTGCTTATGAGCAACGAGTTAAAGgta--agtcgactcagattctcatgttaagagatatatcaagattctgacaaa-tctgttagtttctttctctttttcttttatttgcttgatgtgaggtaca
upper sequence: GLYMA08G01940.3 (Glycine max), 5'ss of exon 5
lower sequence: AT1G63800.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTAAATGGTGATGCTGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAGgtagtaatccttgttaagtttcttcagtataaaactagaatgcttcttacatgctctggcaatccatgctaatagtaagaagctttcttcattattgttg
|| |||||||||||||| || ||| | ||||||||||| |||||||| || ||||| |||||||| || |||| | |||| |||||||| ||||| |||||| | ||| | | ||| | | | ||| | | ||||| | || | | |
CCGCAACTTCTTCTGTATCCGAATCCGTCAGATCCATTGAATGGTGAAGCAGCTGCATTGATGATGCGTGATCGTCCTACCTATGAACAGAGAGTTAAAGgttagatattgagttgattagattct-tgttaccctacatta--tcttatcttcttgctcggtttcag--------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192294461|gb|FG987390.1|FG987390EST: TGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAG AATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGG
genomic: TGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAGgtagtaatcc ... caatgaacagAATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTAAATGGTGATGCTGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAGgtagtaatccttgttaagtttcttcagtataaaactagaatgcttcttacatgctctggcaatccatgctaatagtaagaagctttcttcattattgttg
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA