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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTGGATAATTTTAACACAGCAGTTGTTTCTCCAACCTATTATGCATTGTTCACATCTTTTACATTATTGGCCAGCGCAATCATGTTTAAGgtttatacttctcagaaacataatgaaaaaatctgtgtggaagaagacattttatggttcaagtattttttgtaatcctgcctcctccacttttcttatttag

Basic information

species Glycine max
transcript GLYMA08G00660.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00660.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0031g02960.t01 (Vitis vinifera), 5'ss of exon 7
GCATTGGATAATTTTAACACAGCAGTTGTTTCTCCAACCTATTATGCATTGTTCACATCTTTTACATTATTGGCCAGCGCAATCATGTTTAAGgt-ttatacttctcagaaacata-atgaaaaaatctgtgtggaagaagacatttt--atggttcaagtattttttgtaatcctgcctc-ctccacttt--tcttatttag-----------------
||| |||||| ||| |||||||| ||||||||||| | ||| ||||| ||||||||||| |||||  | || ||||| |  || |||||||||||  | ||     || | | | |     | | |   |   |||| |||| | | |  |  |||      ||| || ||||      || || || |      ||| || |                 
GCACTGGATACTTTCAACACAGCCGTTGTTTCTCCCATCTACTATGCCTTGTTCACATCATTTACTATTTTAGCCAGTGTGATTATGTTTAAGgtactctatcatgcacacatacatgcacatacacacgcagggaaaaagagagtatgaactgtttccccttttgttataatatcaaatcacttcagtgaaactttaattggctttgctttatttctag