1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTCCTGTGTTGGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtattattatagacagtgtttcttattcagtttttttaaccccttagtccatgttttaggggtttacatgagctaattcaataatgttcattttcgattattctcatggatggaatttagatatatctaggagtacgtggattattgtgattattttttttattatttttttgtgggttttttttctgcag
species | Glycine max |
transcript | GLYMA07G40330.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATG TTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACEST: gi|151397206|gb|EV267079.1|EV267079
genomic: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtatta ... ttttctgcagTTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAAC
EST: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATG TTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACEST: gi|193660468|gb|FK603896.1|FK603896
genomic: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtatta ... ttttctgcagTTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAAC
EST: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATG TTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACEST: gi|37995961|gb|CF807550.1|CF807550
genomic: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtatta ... ttttctgcagTTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAAC
EST: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATG TTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACEST: gi|14259347|gb|BG882247.1|BG882247
genomic: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtatta ... ttttctgcagTTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAAC
EST: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATG TTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACEST: gi|8285571|gb|BE023130.1|BE023130
genomic: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtatta ... ttttctgcagTTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAAC
EST: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATG TTACCCAGCTTGAA-GGTGATAACACTTTGTATGGATCTTCTTTGATTGAAEST: gi|298183837|gb|HO029050.1|HO029050
genomic: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtatta ... ttttctgcagTTACCCAGCT-GAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAA
EST: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATG TTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACEST: gi|193511314|gb|FK470823.1|FK470823
genomic: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtatta ... ttttctgcagTTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAAC
EST: TGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATG TTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACEST: gi|193519704|gb|FK477149.1|FK477149
genomic: TGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtatta ... ttttctgcagTTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAAC
EST: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATG TTACCCAGCTGAAAGGTGATAACACTTTGTACGGATCTTCTTTGATEST: gi|10709381|gb|BF009105.1|BF009105
genomic: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtatta ... ttttctgcagTTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGAT
EST: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATG TTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACEST: gi|20812959|gb|BQ297437.1|BQ297437
genomic: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtatta ... ttttctgcagTTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAAC
EST: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATG TTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAAC
genomic: GGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtatta ... ttttctgcagTTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCTGTGTTGGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGgtaagtattattatagacagtgtttcttattcagtttttttaaccccttagtccatgttttaggggtttacatgagctaattcaataatgttcattttcgattattctcatggatggaatttagatatatctaggagtacgtggattattgtgattattttttttattatttttttgtgggttttttttctgcag
- - - - - - - - - - - - - - - - - - AGAGCA