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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCCCTTCGGCATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTAGGAGTCGTGATGAAATATATCTCAAACTACGTACCAGTACAGgtaagcccattatcatattctatgttgctccatgcattggatcatgaaacttaatcattttgtcctgttctaaatttctacag

Basic information

species Glycine max
transcript GLYMA07G40300.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40300.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G59610.1 (Arabidopsis thaliana), 5'ss of exon 4
GCGCCCTTCGGCATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTAGGAGTCGTGATGAAATATATCTCAAACTACGTACCAGTACAGgtaagcccattat-----catattc-tatgttg----ctccatgcattggatcatgaaacttaatca--ttttgtcctgttctaaatttctacag-----
| || ||  ||||||| ||||| ||||| || ||||||||  | || || ||| |||||||||||||||| || ||||| |||||||| ||||||||  || || |     || | || ||  | |    | | ||  | || | |||  |  |||  ||    |    | | |        ||||       
GTGCACTAAGGCATTCACTACAAGATAGGCTTAGCAAAGGAGCTTCAGGAAGGGGTCGTGATGAAATATACCTAAAACTTCGTACCAGCACAGgtaattcctttctacttgcacaatcataaatgggaatccctatttaatgcaacatccatattacccaagcctaagtcggataatgtcccctacttaagtg

upper sequence: GLYMA07G40300.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 4
GCGCCCTTCGGCATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTAGGAGTCGTGATGAAATATATCTCAAACTACGTACCAGTACAGgtaagcccattatcat-------attctatgttgctc-catgcattggatcatgaaacttaatcattttgtcctgttctaaatt---tctacag-------
| ||  |  | |||||||| || |||||||| ||||||||  | || || | || ||||||||||||| |  | ||||| |||||||| |||||||||||| || | |        ||  || || ||   | |  ||    || | ||| |    |||  |   ||   |||| ||   | ||          
GTGCTTTGAGACATTCTCTGCAAGATAGACTTAGCAAAGGAGCCTCAGGGAAGAATCGTGATGAAATAAACTTAAAACTTCGTACCAGCACAGgtaagcccctttttacttgcacaatcataagtggcaagcctatatctactcttcaaa-tagcacatccttagctaacctaagttgggtgtatgaatttatc

upper sequence: GLYMA07G40300.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 4
GCGCCCTTCGGCATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTAGGAGTCGTGATGAAATATATCTCAAACTACGTACCAGTACAGgtaagcccattat-----catattctatgttgctccatgcattggatcatgaaacttaatcattt------tgtcctgttctaaatttctacag-------
| || ||||||||||||||||||||||| || || ||  ||||||| || | ||||||||||||||||||||| || || || || |||||||||  |  ||| ||        ||| | ||||  ||  ||    ||||  |  | ||   | | ||      |    |||| ||| | | | |         
GTGCTCTTCGGCATTCTCTACAGGATAGGCTTAGTAAGAGTTCATCAGGCAAGAGTCGTGATGAAATATATCTGAAGCTTCGCACTAGTACAGgttggtgcatgatataattgcattgtttgtt-ttctttgtgaaggattttatacctccttgagttgtaggtttggttgttttaattctttgccttggtttt