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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGAAGCAGGAGAAAGGAGCAGCATCCTTGAGCATTATGCAATCAAGGAAGAGTCTACTCCGGGCTCATATAATTGCTTTAGTACTAGATGCAGAAGAGgtatatatatgttacatgcattttacattttggagaatgccacataactatgatataatacagacaattttttagcttgataaattgcaatttcataaag...

Basic information

species Glycine max
transcript GLYMA07G40160.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40160.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G39960.1 (Arabidopsis thaliana), 5'ss of exon 6
GACGAAGCAGGAGAAAGGAGCAGCATCCTTGAGCATTATGCAATCAAGGAAGAGTCTACTCCGGGCTCATATAATTGCTTTAGTACTAGATGCAGAAGAGgtatatatatgt---tacatgcattttacat-tttggagaatgccacataactatga---tataatacagacaatt------ttttagcttgataaattgcaatttcataaag---
 ||  |||  || |||||| ||||||| ||||| || ||||||||||| ||||||||  | ||||| ||| | || || ||||| || ||||| |||||||| | ||||      |||   | |  | ||| |||      | |  || |||| |||    | || | ||| |||       |  |  |   ||   ||| | || ||  |     
AACAGAGCGAGACAAAGGACCAGCATCTTTGAGTATCATGCAATCAAGAAAGAGTCTTATGCGGGCACATGTTATCGCGTTAGTTCTCGATGCTGAAGAGgtttgtatacacacatactctcgtgattcatgttttttttttcctgcagaactgtgaaaacagaagaaagaaaatcaagagatgctcacgctatgttttgtatttgcaatatccag

upper sequence: GLYMA07G40160.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0022g01890.t01 (Vitis vinifera), 5'ss of exon 6
GACGAAGCAGGAGAAAGGAGCAGCATCCTTGAGCATTATGCAATCAAGGAAGAGTCTACTCCGGGCTCATATAATTGCTTTAGTACTAGATGCAGAAGAGgtatat-atatgttacatgcattttacattttg--gagaatgccacataactatgatataatacagacaattttttagct-tgataaattgcaatttcataaag
||| ||||||||||||||| | |||||||||||| | ||||||||||| || ||| |  |  |||||||| || ||||||| || || |||||||||||||| | | ||  |||   | | || ||  | ||   || |     |   | || ||||||   | |||    |    || |     | |||| ||| | ||    
GACAAAGCAGGAGAAAGGACCGGCATCCTTGAGCGTAATGCAATCAAGAAAAAGTATTATGAGGGCTCATGTAGTTGCTTTGGTCCTTGATGCAGAAGAGgtgtgtcatgagttttgttctttctatgtgttcatgacatcatgatgaacctgtgatatt-catagatttctgcacaggtgctgaagattgaaatcttatg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193566776|gb|FK526053.1|FK526053
EST:     AGAGTCTACTCCGGGCTCATATAATTGCTTTAGTACTAGATGCAGAAGAG                         ATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGA
genomic: AGAGTCTACTCCGGGCTCATATAATTGCTTTAGTACTAGATGCAGAAGAGgtatatatat ... tattgatcagATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGA
EST: gi|193444238|gb|FK406624.1|FK406624
EST:     GCTCATATAATTGCTTTAGTACTAGATGCAGAAGAG                         ATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGA
genomic: GCTCATATAATTGCTTTAGTACTAGATGCAGAAGAGgtatatatat ... tattgatcagATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGA
EST: gi|21675269|gb|BQ627620.1|BQ627620
EST:     AGAGTCTACTCCGGGCTCATATAATTGCTTTAGTACTAGATGCAGAAGAG                         ATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGA
genomic: AGAGTCTACTCCGGGCTCATATAATTGCTTTAGTACTAGATGCAGAAGAGgtatatatat ... tattgatcagATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGA