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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGCACACCAACACATAGAGGAGGGAAGTATTATGATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtacgttagtatagtagttaattacattgaatcgtttcagatgatgtgataggtcttgtatttggtagaaacccgaatgcttgcatataatagaattgaa...

Basic information

species Glycine max
transcript GLYMA07G40060.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40060.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0568g00010.t01 (Vitis vinifera), 5'ss of exon 4
GAATGCACACCAACACATAGAGGAGGGAAGTATTATGATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtacgttagtatagtagttaattacattgaatcgtttcagatgatgtgataggtcttgtatttggtagaaacccgaatgcttgcatataatagaattgaa--
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GAGTGCAAGGTCACAAAGAAAGGTGGAGCTTATTATGAATTCTGGCGAAACACAAGATCTGTGAAATCGACCATCCTTCATTTCCAAgtatgctg--ataccattttatttaatcatgttaaattggattatgttcttgtacttgtatgatgcacttgattgcaaaactttgctttctcgatgtgcaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396369|gb|EV266246.1|EV266246
EST:     ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGGCAACATCAAAACATGATGTATATCTTGTTTCG
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtacgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGTATATCTTGTTTCG
EST: gi|192324872|gb|FK015368.1|FK015368
EST:     ATTTCTGGCAAAACACTCAATCTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGACAACATCAAAGCATGATGTATATCTTGTTTCG
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtacgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGTATATCTTGTTTCG
EST: gi|19345980|gb|BM890860.1|BM890860
EST:     ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGTATATCTTGTTTCG
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtacgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGTATATCTTGTTTCG
EST: gi|193400537|gb|FK369690.1|FK369690
EST:     TGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGTATATCTTGTTTCG
genomic: TGAAATCAACAATACTTCATTTCCAAgtacgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGTATATCTTGTTTCG