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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTGATTTCGGTGCTATTAGATCTGCCAGGACTACTTTTTTTCTCAACATATACACTTCTTGTCCTTTTCTGGGCAGAAATTTATCACCAGgcaagtcacttctctttattcttttgatattattttattgaacgaaatagaaccacctcacagtaaataaacaaaaagtaattacaataataaaagaattatctgtcttcgcatgatcatagaaattcttttgtaaagagggaaattctaattttattccaatgactgaacag

Basic information

species Glycine max
transcript GLYMA07G38920.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38920.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0116g00020.t01 (Vitis vinifera), 5'ss of exon 4
GTGTTGATTTCGGTGCTATTAGATCTGCCAGGACTACTTTTTTTCTCAACATATACACTTCTTGTCCTTTTCTGGGCAGAAATTTATCACCAGgcaagtcacttctctttattcttttgat-attattttattgaacgaaatagaaccacctcacagtaaataaacaaaaagtaattacaataataaaagaattatctgtcttcgcatgatcatagaaattcttttgtaaagagggaaattctaattttattccaatgactgaacag
    |||||| |||  | || ||||| || ||||| || |||||||| ||||| ||||||||||| || || |||||||| || |||||||||||||||            |||||||||| ||| || || | |  | | | | |     | | | |   |||     ||    | ||  |  | |             || | |||| | ||  |  | |||||                                         
--ACTGATTTTGGTATTGTTGGATCTTCCTGGACTTCTGTTTTTCTCTACATACACACTTCTTGTGCTATTTTGGGCAGAGATATATCACCAGGCAAGTAGA-

upper sequence: GLYMA07G38920.2 (Glycine max), 5'ss of exon 4
lower sequence: PP1S295_28V6.1 (Physcomitrella patens), 5'ss of exon 4
GTGTTGATTTCGGTGCTATTAGATCTGCCAGGACTACTTTTTTTCTCAACATATACACTTCTTGTCCTTTTCTGGGCAGAAATTTATCACCAGgcaagtcacttctctttattcttttgatattattttattgaacgaaatagaaccacctcacagtaaataaacaaaaagtaattacaataataaaagaattatctgtcttcgcatgatcatagaaattcttttgtaaagagggaaattctaattttattccaatgactgaacag
 | |||      || || || |||||||| ||  || |||| ||| |||||||||| ||||| || ||||||||||| ||||| |||||||||| |||    |     |   ||| ||      |||  | ||   |  ||    | |  |      ||||     ||| ||  |   |||  ||   || ||   ||    |   | |     || || |     | |    |   ||| |  | | ||| ||            
ATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAATTTTCTTCACAACATATACTCTTCTGGTGCTTTTCTGGGCTGAAATCTATCACCAGgtaag--gttgggagtggctctctt-----cattcaactggtagctatgctgctaagttctcacaaatggctgaaatgt--tctgaattctatg-gagttgagtgcacccatgtaacagacgacatgcgagatttattgtgcggatttttctgtgatttcag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26268856|gb|CA819919.1|CA819919
EST:     NCTCAACATATACACTTCTTGTCCTTTTCTGGGCAGAAATTTATCACCAG                         GCAAGGGGTTTACCAACTGATAAGCTCAAGATAGTCTATATTTCAGTAAAT
genomic: TCTCAACATATACACTTCTTGTCCTTTTCTGGGCAGAAATTTATCACCAGgcaagtcact ... gactgaacagGCAAGGGGTTTACCAACTGATAAGCTCAAGATAGTCTATATTTCAGTAAAT