Sequence
atgc intronic sequence ATGC exonic sequenceGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAGgtattaagttacagtgattgaagttactagaaaatgtatatataggatctctcttttatgatctaggttatgttattttacttctgggaagtggagattg...
Basic information
species | Glycine max |
transcript | GLYMA07G38820.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G38820.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G391936_T02 (Zea mays), 5'ss of exon 4
GTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAGgtattaagttacagtgattgaag-ttactagaaaatgtatatataggatctctcttttatgatctaggttatgttattttacttctgg-gaagtggagattg-
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GTTCTAGCAGCAACCCAGAGGCCTGGAACGGAGGGGAAAAGGTGGTTTCAGGGTACTGCTGATGCAGTTCGGCAGTTCGACTGGCTTTTCGATgtaa-gagttgttcggtttgatgctttctttttcatggac-tgtacaaacatgccaatatagtgtcagt-gtagtatcaaatacccgatgcagttacaaaaaa
upper sequence: GLYMA07G38820.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g02880.t01 (Vitis vinifera), 5'ss of exon 4
GTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAGgtat---taagttacagtgattgaagttactagaaaatgtatatataggatctctcttttatgatctaggttatgttattttacttctgggaagtggagattg
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GCTCTAGCAGCCACTCAAACTCCAGGGGAGGCTGGTAAAAGATGGTTCCAGGGCACTGCAGATGCTGTGCGGCAGTTCCATTGGCTCTTTGAGgtacccatatttcacttctagttaggattctggggtaacca-atagacggtatcaaaccaagaagggtgttaaagcttttcatcctatag-------------
upper sequence: GLYMA07G38820.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ25399 (Selaginella moellendorffii), 5'ss of exon 4
GTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAGgtattaagttacagtgattgaagttactagaaaatgtatatataggatctctcttttatgatctaggttatgttattttacttctgggaagtggagattg
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GTACTGGCAGCAACGCAAACTCCAGGGGAGTCTGGTATGAATTGGTTTCAAGGGACCGCGGACGCCGTGAGGCAGTTCACTTGGCTTTTTGAGgtactc--ttaccatttccaaggtg--ttggactcgcatgctgaggtttcgttttgtatga-caag----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151404121|gb|EV273931.1|EV273931EST: GGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAG GATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCAC
genomic: GGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAGgtattaagtt ... tatgttgtagGATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAGgtattaagttacagtgattgaagttactagaaaatgtatatataggatctctcttttatgatctaggttatgttattttacttctgggaagtggagattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG