Sequence
atgc intronic sequence ATGC exonic sequenceTTTTCCACCTCAAGTGAAGTTTCCTTTGTGTACCCTGGCTGAAACCCCTAGAACTGCTGCTCACTGTATTGAATACGCCCACTTGATTAAGTGGAATGAGgtaaatcttcgttcattctttctgttattttttataatgtccattatttcaaccaaaatttattgtacag
Basic information
species | Glycine max |
transcript | GLYMA07G38770.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G38770.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G19180.1 (Arabidopsis thaliana), 5'ss of exon 4
TTTTCCACCTCAAGTGAAGTTTCCTTTGTGTACCCTGGCTGAAACCCCTAGAACTGCTGCTCACTGTATTGAATACGCCCACTTGATTAAGTGGAATGAGgtaaatcttcgttcattctttctgttatttttt----ataatgtccattatttcaaccaaaatttatt--gtacag------------------------------
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TTTCCCACCTCAAGTGAAGTTTCCGTTGTGCACTCTTGCAGAAACCCCTAGGAATGCAGCTCATTGCATTGAATATGCTCATCTTATTCAGTGGGAAACGgta--tgtcaatgaattctttctgtagtctctctgaaatagactcttctttcctagtgaatacgtatttggtttattcatggtaaactcgattcttacttctgcag
upper sequence: GLYMA07G38770.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g02820.t01 (Vitis vinifera), 5'ss of exon 4
TTTTCCACCTCAAGTGAAGTTTCCTTTGTGTACCCTGGCTGAAACCCCTAGAACTGCTGCTCACTGTATTGAATACGCCCACTTGATTAAGTGGAATGAGgtaaatcttcgttcattctttctgttattttttataatgtccatt-------atttcaaccaaaatttattgtacag------------
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TTTTCCCCCTCAAGTGAAGTTTCCTTTATGCACTCTTGCAGAAACCCCTAGAACTGCTGCTCATTGTATTGAATATGCCCACTTAATCAAGTGGGATGAGgttaggcattgtcatttttccaagctatatatcccagtgttcttttgaactaatttctctaccatcttatttcatattttattttttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51335050|gb|CO978916.1|CO978916EST: TACGCCCACTTGATTAAGTGGAATGAG GTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGG
genomic: TACGCCCACTTGATTAAGTGGAATGAGgtaaatcttc ... tattgtacagGTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTCCACCTCAAGTGAAGTTTCCTTTGTGTACCCTGGCTGAAACCCCTAGAACTGCTGCTCACTGTATTGAATACGCCCACTTGATTAAGTGGAATGAGgtaaatcttcgttcattctttctgttattttttataatgtccattatttcaaccaaaatttattgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA