Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCAAATTTGGTGCGTCCTGCAAGTACCACCATCCTAGGCAGGTGCCAGGCACTGCTACCCCTGTGCCACTAAATTATTATGGATACCCATTGCGAGTGgtctgtatcagtttgtgtttactgcgtaaaattatgtgtgctttgtgaattttggtgtcactcttttcctaacgatgatggaagttttgttcaaacttgaattttcgtgcatgataacag

Basic information

species Glycine max
transcript GLYMA07G37980.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37980.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g01650.t01 (Vitis vinifera), 5'ss of exon 4
ATGCAAATTTGGTGCGTCCTGCAAGTACCACCATCCTAGGCAGGTGCCAGGCACTGCTACCCCTGTGCCACTAAATTATTATGGATACCCATTGCGAGTGgtctgtatcagtttgtgtttactgcgtaaaattatgtgtgctttgtgaattttggtgtcactcttttcctaacgatgatggaagttttgttcaaacttgaattttcgtgcatgataacag
 || ||||||||||| || |||||||| |||||||| || ||||    ||| |||| || ||||||| ||||||| |||| |||||| ||||||||   ||||||| |  |||     ||  |       ||  |||     ||     | ||||  ||||   |  |||   || | | | ||||  |||    ||  ||  ||  |   |    ||||
CTGTAAATTTGGTGCTTCTTGCAAGTATCACCATCCAAGACAGGGAGGAGGAACTGTTAGCCCTGTGACACTAAACTATTTTGGATATCCATTGCGTCCGgtctgtgtttgttgcaactttttttaatctatcctgttaatgttagatttattggaatcac--atagcct---gaagtttgcagttaagtt--ggctcaaagcttgatatgttgctacag