Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgttaattaatttgcttatatatgcttttgttcccgtgataaatgtaatgtaatatccaatttgacacctgcttcaagagttccaaatataatttgatatatttttatttttttttgtccctaatag

Basic information

species Glycine max
transcript GLYMA07G37370.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298177749|gb|HO023768.1|HO023768
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCT                         GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
EST: gi|254333784|gb|GR848702.1|GR848702
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCT                         G-TGT-CCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
EST: gi|13311837|gb|BG405488.1|BG405488
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGGTTTTTAGCT                         GTTGTCCCTGANACACTAGATGGGAAGCCCTTTATCAATCCAGCA
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
EST: gi|7691086|gb|AW759220.1|AW759220
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCT                         GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
EST: gi|298182359|gb|HO026534.1|HO026534
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCT                         GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
EST: gi|298177765|gb|HO027318.1|HO027318
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCT                         GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
EST: gi|209728568|gb|BW663568.1|BW663568
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCT                         GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
EST: gi|254333783|gb|GR848701.1|GR848701
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCT                         GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
EST: gi|22541783|gb|BU091626.1|BU091626
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCT                         GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
EST: gi|10231639|gb|BE800527.1|BE800527
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCT                         GTTGTCCCTGANACACTAGATGGGAAGCCCTTTATCAATCCAGCA
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
EST: gi|21888794|gb|BQ742007.1|BQ742007
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCT                         GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
EST: gi|33388309|gb|CA851516.1|CA851516
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCT                         GGTGGCCCTGAAACACTAGATGGGGAAGCCCTTTATCAATCCAG
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGG-AAGCCCTTTATCAATCCAG
EST: gi|6482218|gb|AW201489.1|AW201489
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGGTTTTTAGCT                         GTTGTGCCTGAAACACTANATGGGAAGCCCTTTATCAATGCAACA
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
EST: gi|26269536|gb|CA820599.1|CA820599
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCT                         GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
EST: gi|192300324|gb|FG988801.1|FG988801
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCT                         GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
EST: gi|192323856|gb|FK015637.1|FK015637
EST:     ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCT                         GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA
genomic: ATTCCAGCATTTATTGAAAGGGAGCGCGAATATCGTTTTTTAGCTgtgagttgtt ... tccctaatagGTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA