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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTGAAAGTTGGCTCCTCAGACAAAATAGTAACTGCAAAAGATATCATCATTGCTACTGGTTCTGTTCCATTTGTTCCTAAGGGCATTGAAATTGATGgtacatatcaatcctttctttttatgacattaatatttaatgttccttgttctagttttactgaattcagtggatttaggcttgccttccggctacaaga...

Basic information

species Glycine max
transcript GLYMA07G37050.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 5'ss of exon 4
AAGGTGAAAGTTGGCTCCTCAGACAAAATAGTAACTGCAAAAGATATCATCATTGCTACTGGTTCTGTTCCATTTGTTCCTAAGGGCATTGAAATTGATGgtacatatcaatcctttctttttatgac--atta-atatttaatgttccttgttctagttttactgaattcagtggatttaggcttgccttccg--gctacaaga
 | |  |||||||| |   ||||||||  | | |||||||   ||||||||||||||||||| || ||||| |||||||| |||||||| ||  |||||||||  ||  |  | |||||| |  |||   || |   || | || |   | | ||||||||  |   | | |    ||| | ||  |   ||    |||  ||||
TATGGAAAAGTTGGTTTTCCAGACAAAGAAATCACTGCAAGGAATATCATCATTGCTACTGGATCAGTTCCTTTTGTTCCCAAGGGCATAGAGGTTGATGgtaagtacta-ccttttcttctcttgatggatcatgcatctcatttagttagctctagttt--ccagactgaac--attgaagcaagtgatcaaatgctgaaaga

upper sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G145595_T01 (Zea mays), 5'ss of exon 4
AAGGTGAAAGTTGGCTCCTCAGACAAAATAGTAACTGCAAAAGATATCATCATTGCTACTGGTTCTGTTCCATTTGTTCCTAAGGGCATTGAAATTGATGgtacatatcaatcctttctttttatgacattaatatttaatgttccttgttctagttttactgaattcagtggatttaggcttgccttccggctacaaga---
 | | ||||||||| | | |||||||   | | ||||| | | | ||||| ||||| ||||| |||||||| ||||| || |||||||||||||| |||||||  ||    |  |||     |       |  | | |   |  | |||| |  |||  | |      | || | | ||     |  | | | | ||||    
TATGGGAAAGTTGGTTTCCCAGACAATGAAATCACTGCTAGAAACATCATAATTGCCACTGGATCTGTTCCTTTTGTCCCCAAGGGCATTGAAATAGATGgtagttactgtttttttggaacttcatgtctgttttcttgagaactttgtccc-gttacatttggcctaatgaaatgagaa--acaatgctgttccaagctcc

upper sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 4
lower sequence: AT3G16950.1 (Arabidopsis thaliana), 5'ss of exon 4
---AAGGTGAAAGTTGGCTCCTCAGACAAAATAGTAACTGCAAAAGATATCATCATTGCTACTGGTTCTGTTCCATTTGTTCCTAAGGGCATTGAAATTGATGgtacatatcaatcctttctttttatgacattaatatttaatgttccttgttctagttttactgaattcagtggatttaggcttgccttccggctacaaga
   ||||| |||  |||       ||||| ||  | |||||||||||||| |||||||| ||||| ||||| || ||||| ||||| || |||||| |||||||||| |     | |||  |||  | |     | |  |||| |   | ||  |    || | |  ||||  || ||    | || | ||  |||       
CAAAAGGTTAAATATGGG---AAGGACAATATTATTACTGCAAAAGATATAATCATTGCCACTGGATCTGTGCCGTTTGTCCCTAAAGGAATTGAAGTTGATGgtacgt-----ttcttgttttggacgtag--agttgttaagggagcatg--cagacttgatt--attccttgaat----gtttacattttggcgctgcag

upper sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 4
lower sequence: EFJ16882 (Selaginella moellendorffii), 5'ss of exon 4
AAGGTGAAAGTTGGCTCCTCAGACAAAATAGTAACTGCAAAAGATATCATCATTGCTACTGGTTCTGTTCCATTTGTTCCTAAGGGCATTGAAATTGATGgtacatatcaatcctttctttttatgacattaatatttaatgttccttgttctagttttactgaattcagtggatttaggcttgccttccggctacaaga
 | |  ||  | ||||     |||||| |  | || || |||||||||||||| ||||| || || ||||||||||||||   ||| |||||||| ||||||    | |  | |  || ||||| |  ||  ||   |||      || ||     || |||  | ||||                              
TATGGCAAGATCGGCTATGTTGACAAAGTTATCACAGCCAAAGATATCATCATCGCTACCGGATCAGTTCCATTTGTTCCACCGGGGATTGAAATAGATGgtg---agcgtttcactccttttaag--atcgatcactaaacgaatttatt---acttgactacactcag------------------------------

upper sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 4
lower sequence: EFJ06739 (Selaginella moellendorffii), 5'ss of exon 4
AAGGTGAAAGTTGGCTCCTCAGACAAAATAGTAACTGCAAAAGATATCATCATTGCTACTGGTTCTGTTCCATTTGTTCCTAAGGGCATTGAAATTGATGgtacatatcaatcctttctttttatgacattaatatttaatgttccttgttctagttttactgaattcagtggatttaggcttgccttccggctacaaga
 | |  ||  | ||||     |||||| |  | || || |||||||||||||| ||||| || || ||||||||||||||   ||| |||||||| ||||||     |   ||  | ||||||| |  ||  ||   |||      || ||     || |||  | ||||                              
TATGGCAAGATCGGCTATGTTGACAAAGTTATCACAGCCAAAGATATCATCATCGCTACCGGATCAGTTCCATTTGTTCCACCGGGGATTGAAATAGATGgtgagcttt--tcactcctttttaag--atcgatcactaaacgaatttatt---acttgactacactcag------------------------------