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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTATTGTCATGCAATGgtatgaattcagcacatgtagtctttacttttaccagttatttgcttcccagaagaaagaaagcatgagatgtctgacttgaatttctatatttgtcttccttaatgaag

Basic information

species Glycine max
transcript GLYMA07G33120.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G33120.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G081915_T02 (Zea mays), 5'ss of exon 3
GCGCGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTATTGTCATGCAATGgtatgaattcagcacatgtagtctttacttttaccagttatttgcttcccagaagaaagaaagcatgagatgtctgacttgaatttcta-tatttgtcttccttaatgaag
||||| ||||| ||||||||||| ||||||||||| ||||| || ||| | |||||| | ||   |      |  ||||| |||  |   |||| |    |  ||      |     |  ||   |||||  |  |||  ||  | ||| ||| |||   ||   
GCGCGTTTCTTTTTCCAACAACTCATATCAGGGGTCAGCTACTGCCATTCCATGgtacgtatattgt-----ttttctttgcttccaat-gttacta--ctgtcaatctgtactgctctggactggtctgtttaaaatcgcttctgtttttctgcctacctg---

upper sequence: GLYMA07G33120.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G081915_T01 (Zea mays), 5'ss of exon 3
GCGCGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTATTGTCATGCAATGgtatgaat-tcagcacatgtagtctttacttttacca--gttatttgcttcccagaagaaagaaagcatgagatgtctgacttgaatttctatatttgtcttccttaatgaag
||||| ||||| ||||||||||| ||||||||||| ||||| || ||| | |||||| | || |         | |  |  | | |||| |  || | |   | |      | |        |   |  ||     ||  |||||   |   | ||| | ||     
GCGCGTTTCTTTTTCCAACAACTCATATCAGGGGTCAGCTACTGCCATTCCATGgtacgtatattgtttttctttgcttccaatgttactactgtcaatctgtactgctctggactggtctgtttaaaatcgcttctgtttttctgcctacctgttcgtcaag----

upper sequence: GLYMA07G33120.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0063g01080.t01 (Vitis vinifera), 5'ss of exon 4
GCGCGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTATTGTCATGCAATGgtatgaattcagcacatgtagtctt-tacttttaccagttatttgcttcccagaagaaagaaa-gcatgagatgtctgacttgaatttctatatttgtcttccttaatgaag
|| || |||||||||||||||||| ||||||| || ||||| |||||||| ||||||    ||||  || | |||| || | | || |||  |  |||  |        |||| ||| | |  ||  |  | | ||| ||||| || || || || |||  |||||
GCACGTTTCTTCTTCCAACAACTTGTATCAGGAGTCAGCTACTGTCATGCGATGgta----ttcaa-acttttagttttctgccttaacctctgttttattatttgcctgaaaaaaatgaactaggcgattaagttggatttc-atgtt-gtatttctttttgaag