1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTCGTATCGGTAATCCATTTATTCGTGGGAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaagttcaattactcccagcccagaattcaaaaaagaaaaatgaaattgccaagtgctactacttcacgattttttcttgattgatcctgttaa...
species | Glycine max |
transcript | GLYMA07G32190.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|209720817|gb|BW677391.1|BW677391
genomic: TTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|120534376|gb|EH262509.1|EH262509
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCGGTGGCTGTGTGTCATEST: gi|7691041|gb|AW759175.1|AW759175
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: CCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|207691594|gb|GD675269.1|GD675269
genomic: CCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|213615350|gb|DB963544.1|DB963544
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|13480400|gb|BG509743.1|BG509743
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCGGTGGCTGTGTGTCATEST: gi|20448694|gb|BQ252818.1|BQ252818
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|120534368|gb|EH262501.1|EH262501
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCGGTGGCTGTGTGTCATEST: gi|7796788|gb|AW782182.1|AW782182
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|213589339|gb|DB961672.1|DB961672
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|20448800|gb|BQ252924.1|BQ252924
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|213587747|gb|DB955609.1|DB955609
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|209721814|gb|BW680013.1|BW680013
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTEST: gi|120531507|gb|EH259640.1|EH259640
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAAACTACTGAAGTTGCTCATEST: gi|23063798|gb|BU578627.1|BU578627
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCGGTGGCTGTGTGTCATEST: gi|15285164|gb|BI469055.1|BI469055
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|11412623|gb|BF424634.1|BF424634
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|26269548|gb|CA820611.1|CA820611
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|17519248|gb|BM188290.1|BM188290
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCGGTGGCTGTGTGTCATEST: gi|6481941|gb|AW201212.1|AW201212
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|213587892|gb|DB959716.1|DB959716
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCTTTCCAAAGCGTGCT CCTATAGACTCCA-CCNTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAEST: gi|7796582|gb|AW781979.1|AW781979
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACC-TACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCA
EST: GTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|20814778|gb|BQ299256.1|BQ299256
genomic: GTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|17153411|gb|BM143344.1|BM143344
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCGGTGGCTGTGTGTCATEST: gi|15337762|gb|BI498418.1|BI498418
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|26058933|gb|CA801847.1|CA801847
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTCTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCEST: gi|16104872|gb|BI892612.1|BI892612
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCC
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|7691923|gb|AW760040.1|AW760040
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|213593376|gb|DB973569.1|DB973569
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|193705590|gb|FK643540.1|FK643540
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|23059611|gb|BU578385.1|BU578385
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|24137046|gb|BU927556.1|BU927556
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCGGTGGCTGTGTGTCATEST: gi|213590584|gb|DB973329.1|DB973329
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCATEST: gi|15287351|gb|BI471242.1|BI471242
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAGTGGCTGTGTGTCAT
EST: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCT CCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAG
genomic: GAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaag ... ttttctgtagCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCGTATCGGTAATCCATTTATTCGTGGGAGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCAAAGCGTGCTgtaagtcaagttcaattactcccagcccagaattcaaaaaagaaaaatgaaattgccaagtgctactacttcacgattttttcttgattgatcctgttaa
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