1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttacatttcttgattctgcatttgaagtttttttttttttttggttctttttttttgggggggggggggggggaattttgtttgtgttggccttc...
species | Glycine max |
transcript | GLYMA07G31090.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|192297701|gb|FG989591.1|FG989591
genomic: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|7146910|gb|AW508832.1|AW508832
genomic: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTGTTCCCAATAATCCEST: gi|19453024|gb|BM954434.1|BM954434
genomic: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|9259727|gb|BE347874.1|BE347874
genomic: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|19934355|gb|BQ079383.1|BQ079383
genomic: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|42722448|gb|CK768347.1|CK768347
genomic: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|16996884|gb|BM086256.1|BM086256
genomic: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|13311994|gb|BG405645.1|BG405645
genomic: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: CAGGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|151409246|gb|EV279054.1|EV279054
genomic: CAGGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|254315266|gb|GR830259.1|GR830259
genomic: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
genomic: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttacatttcttgattctgcatttgaagtttttttttttttttggttctttttttttgggggggggggggggggaattttgtttgtgttggccttc
- - - - - - AAAGAA
- - - - - - AAGAAG
- - - - - - - - AAGAAG
- - - - - - - - AGAAGC
- - - - - - - - - AAGCTG
- - - - - - - - - - AGCTGC
- - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggggg