Sequence
atgc intronic sequence ATGC exonic sequenceACTTGGTTTCTTCTGTGCTGGTGTGGTACTCAATCAGTTTGGTTTAATTAGAAACCTTACAGATGTTAAAGTTTTATCCGAATGGGGGATCCTTTTCTTGgtaagatacatctttgcagctactctagttattattttttatttcatttgtctgtcaccttaaatgaagcattgaaactgtgatatataaacatatttta...
Basic information
species | Glycine max |
transcript | GLYMA07G30360.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 4
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 3
ACTTGGTTTCTTCTGTGCTGGTGTGGTACTCAATCAGTTTGGTTTAATTAGAAACCTTACAGATGTTAAAGTTTTATCCGAATGGGGGATCCTTTTCTTGgtaagatacatctttgcagctactctagttattattttttatttcatttgtctgtcaccttaaatgaagcattgaaactgtgatatataaacatatttta
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ACTTGGTTTCTTCTTTGCTGGTGTTGTACTCAACCAATTTGGTTTGATTAGAAATCTCACAGATGTTAAAGTTCTTTCAGAATGGGGGATTCTTTTCCTGgtgag------cattgtgcataattatgttcataggctttacgtgttgaatgagtagtaatgactg--gccttatcctgattatctttggcag-------
upper sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 3
ACTTGGTTTCTTCTGTGCTGGTGTGGTACTCAATCAGTTTGGTTTAATTAGAAACCTTACAGATGTTAAAGTTTTATCCGAATGGGGGATCCTTTTCTTGgtaagatacatctttgc--agctactctagttattattt-tttatttcatttgtctgtcaccttaaa-tgaagcattgaaactgtgatatataaacatatttta
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ACTTGGTTTCTTCTTTGCGGGGGTTGTGCTCAATCAGCTTGGACTGATTCGGAATCTTACAGATGTTAAAGTTCTATCTGAGTGGGGGATTCTTTTCTTGgtaaggcacttaattgctaagttgctcttcttctgctatatctactgccaaattttctcattgcaatctgattggctgagtccttcacccataataatag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213597656|gb|DB962566.1|DB962566EST: GAAACCTTACAGATGTTAAAGTTTTATCCGAATGGGGGATCCTTTTCTTG CTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTGAAAGCTCTTGCA
genomic: GAAACCTTACAGATGTTAAAGTTTTATCCGAATGGGGGATCCTTTTCTTGgtaagataca ... ttcttttcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTGAAAGCTCTTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTGGTTTCTTCTGTGCTGGTGTGGTACTCAATCAGTTTGGTTTAATTAGAAACCTTACAGATGTTAAAGTTTTATCCGAATGGGGGATCCTTTTCTTGgtaagatacatctttgcagctactctagttattattttttatttcatttgtctgtcaccttaaatgaagcattgaaactgtgatatataaacatatttta
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